| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0524 |
|---|
| Symbol | |
|---|
| ID | 8379709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 568244 |
|---|
| End bp | 569149 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645003256 |
|---|
| Product | cytochrome c-type biogenesis protein CcsB |
|---|
| Protein accession | YP_003160491 |
|---|
| Protein GI | 256831764 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR03144] cytochrome c-type biogenesis protein CcsB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00389658 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTCA GTGAACTGAG TGATTACTTT GTGTGGGGAA CGGTCAGCGC GTACACGCTC
GCGATGGTGG CGTTCGCCAT AGATTTGGCG AAAGTCGCCG AGAATGTGCG CTCTGATGAA
CGCCCTACCT ATGTGGGTCG GTCGACTCGG GCGCTGGGTA TTGCCATGGC CTTAACCACT
GTGGGGGTGC TCTTTCACCT GGTTGCCGCG ATTGTGCGAG GGTTCGCGGC AGGCCGGGTG
CCGTGGGCTA ACATGTATGA ATTTACGTTG ACTGGAACAC TAGCCGCTGT GGGTGTCTTC
CTCGTGGTCA ACCTATGGAA AGAGATCCGG TTTCTTGGTG TCTTTGTGAC TGTTCTTGCG
ATCACTTTCC TTATGGTGGG GTTGCAAGCG TTCCACATCG ACGCTGATGG TGTGGAACCA
GCGTTGCAGT CGTACTGGAT TGTTATCCAC GTGGGTATCG CAGTGTTAGC GACCGGGTTG
TTCACTGTGG CGTTCATTAT TTCGGTGCTG CAGTTGATGC GTGCTGCGTG GAATCGGGCA
ACTGAAGCAG GCAATACCCC ACGGTGGGCG TGGCGTGCTG TCCTTCCAGC CCCTGATCGG
CTTGAGGCGT TGTCTTTCCG CCTCAACGCG GTGGCTTTTG TCATGTGGAC CTTCACGATC
ATTGGTGGCG CTGTGTGGGC TAATGACGCG TGGGGTCGAG CGTGGAACTG GGACCCCAAA
GAAGTATGGT CCTTCATTGT GTGGGTCATC TACGCCGCCT ACCTGCATGC ACGTGCCACT
CGCGGCTGGG ATGGTCAACG CGCTGCCTGG TTTGTTGTGG TGGGGTATGC CGCTGTGCTC
TTTAACTTCA CCGGCGTCAA CATTTTGTTT GACGGGCTCC ACTCCTACGC CCAACTCCCA
CAGTAA
|
|---|
| Protein sequence | MNLSELSDYF VWGTVSAYTL AMVAFAIDLA KVAENVRSDE RPTYVGRSTR ALGIAMALTT
VGVLFHLVAA IVRGFAAGRV PWANMYEFTL TGTLAAVGVF LVVNLWKEIR FLGVFVTVLA
ITFLMVGLQA FHIDADGVEP ALQSYWIVIH VGIAVLATGL FTVAFIISVL QLMRAAWNRA
TEAGNTPRWA WRAVLPAPDR LEALSFRLNA VAFVMWTFTI IGGAVWANDA WGRAWNWDPK
EVWSFIVWVI YAAYLHARAT RGWDGQRAAW FVVVGYAAVL FNFTGVNILF DGLHSYAQLP
Q
|
|---|
| |