| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0272 |
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| Symbol | |
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| ID | 8381721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | + |
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| Start bp | 289744 |
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| End bp | 293952 |
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| Gene Length | 4209 bp |
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| Protein Length | 1402 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645003005 |
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| Product | putative sensor with HAMP domain |
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| Protein accession | YP_003160248 |
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| Protein GI | 256831521 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.152127 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAAGC GCTTAAACGT GCAGAATAAG ATCCTTGCGA CCCTGGCTGT TCCGATCCTC
GTGATTCTCG TTGCGGCAAC GGTCTTTGCT GGACAGTCAA TTTCTGCGTG GCGTGAAGCC
CAGCAGACGA AGAACGTTGT GGACCTGGTT GATTCTGGGC AAACGTTCAT CGAGATCATC
CAGAACGAAC GGTATTGGGC AATTGAGTAT CGTCGAGGGG CAGCAGGTGC GGGCGAAGAA
TGGCAGAAGG CTATTGCCTT GCGTAATCAA GCGCTTGACG AAGTAGGGTC GGCACTTCGC
GACATTGATA CGTCACGGAT GTCCCCTGAA GTTCAGCGTG CCATTGACCT CGCGCTGAAA
AATACGCGTG CCTTCCTCGA GGCGGCTGAA GGCCAAGCAT CACGTGGTGC GGCAACCACT
CAAGTGGTGT CGAAGGCGTA CACCGACGCG ATCGACAACA TTTTGCGCGT GGCCTCCCAG
CTAGGAAACA CGGTCGGTGA CCGGCGTGTT GGTAACGCAG CGCTTGCTTA CGTGACCACA
ACGAACTACC TCGACGACAC GATCTCTGAA ATCCCGCTGA TTTCTGAAGC ACTCACCGTG
TCGCGCAGCA ACGACGGTGT GAACCGTGTG TACCGAGAAC TCGCCACCAC AGTGCGGTTG
ACCAACGCAA GCCGTGACGA CACCCGAAAC ACGTTGAACC GACTCGTTGG TGTCGACTTC
CCCAGCTTGA AGATCGCATC CGCTCAATAC ACCGCGATCC GCCAGTATTT GGCCAACGGG
AACATCGGCG CGATTTCTGG TCCACTCGCG GAACAATGGG GCGAACTTGC CCAGGTTGAG
GTCGAAGCAG TTGACCCCAT CGTGAAAGCG ATGATGGCCG AGATGAAAGA CGCTGCAAAC
GACCAGCTCA ACGCGGCGCG AACCAACTCC ATCCTGACAA TCATTGCCGT GCTGGTCGTC
TTCGCCGCCT CACTGGCCAT CGCGTACGTC ACCTCTCGAT CCATCACCCG ACCGCTGCGT
CGACTCACCG AGTCCGCAGA GCGAGTGAAG GAAGAACTGC CACGCCTGGT AGAACAGGTG
GCGATCCCTG GTCAAGGACC AGACCTCGAC CTCGAAGAGA TCGACATTGA CTCTCGAGAC
GAAGTGGGAC AGCTCGCCGC AGCGTTCAAC TCTGTGAACC ACACCACCGT AGAAGTTGCC
CGTGAACAGG CAGCGCTTCG TGGCTCCATC GCGGAAATGT TCGTCAACGT GGCCCGTCGT
GACCACGTCC TCCTCAACCG TCAGCTTGGG TTCCTTGACG AACTCGAACG CGCGGAAGAA
GACCCGAACA TCCTTGCAAA CCTCTTTAGG CTCGACCACC TTGCAACACG TATGCGTCGT
AACTCCGAGT CACTCCTGGT GCTCGCTGGT ATCGACTCTG GTCGTCGAGT GCGCCAACCC
ATGCCGATGT CGGACGTGGT CCGTACCGCG TCATCTGAGA TTGAGCTGTA TGACCGGATC
CAACTGAACC TGCAATCCGA CCCGGCCATG CTCGGTCACA ATGCGCTGAA CGCCGCGCAC
CTCATTGCAG AACTCTTGGA AAACGCAACA AACTTCTCCG AACCAAACAC ACCTGTTGAG
GTGACCACGG ATGCGGGACG AAACTTCGTC ACCGTCACCA TCCGTGACTA CGGTTTGGGC
ATGTCTGATG ACGACATCGC TGAAGCGAAC CGTAAAGTCG CGTCACGGTC AGCAACTGAC
GTGATCGGTG TGCAGCGTGT GGGTCTGTTC GTGGTTGGTC GTCTCGCAGA CCGTCTCGGT
GTGCACGTGG CGTTTGCCCG CCCCAATGAT GGCTCCACCG GAACCGTGGC CACACTGTCC
TTCCCCTGGA ACCTCTTTAC TGATGCTGCC TACCAGGACT ACCAAGGCCG TGCACCACAA
GCAGGTAGCC AAACCTACCA GCAGCCTCAA GCACCTCAAC CATCAAGCCA GTTCGCGCAA
CCACAACAAC CTGCGCAACA GGCCAATCAG TTCGGTCAGC CGCAACAGCC GCAGCAACAG
CAACCCCAAC CGCAGCAACC CATTCAGCAG CCCGCTGGCT ACCCGGTGGA AGAGCCACCG
GTTGTATCCG AAGTGGACCT GAATGCGTTA ACTGATGGTC AAACAAACAC CGGTATGCCA
CGTCGGCGGG TGTCCAACGC ACCCACCGGA CAAAACCAGG CGTTTGCGCC GCAGCAAGAC
TTCTCCGGTG CGCCACTTGG TGGAGGACGC CCTGCGGCGC CAGCACCGCA AGCACCAGCC
CAGCAGGCGC CAGCACAAGG CCTACCAAGC CGTGGGGGCG CACAGCAACA ATTCGCGCCA
CAGCAGTCGG CCGCTAGCGC TCTGCCATCA CGGGGCGGCA ACGGCAACCA AGGTGTGGGG
CTCTCCCCAG ACTTTGGTGA TGACTCACCT GAGATTGTGT TGCCACCACT GGCAACCCCG
ACACGGACAG TCAGCTTTGA TGATGACTCC GCGCCGTGGC AGCCAGAAGT CATCCAAGAA
GCTCGCCCAC TGGTGACCCG CCGTCCAGCG GTGAAAGAAC ACGTGGAAGA GACGCCGCTT
GGTCCTGACG CCTCGTTGGC GGCGCAACCA GAACGCCGTT CTGCGATGTT CTCGAACTTC
CGCTCCTTCT CAGCACCACA AGAAGGTACA GAAGCCCAAG CGCCATCAGC TGGCTCGCCA
TTTGCTCAGC CTGCAGACGA CGATGACTCA ACGCAGGTCA TTGACCGTGT GGCTGACTCG
CCGCGTGCTG AAGAAGTCGC TGAACCGTGG CGGGGTCAGC AGGACACTGT GACTCATTCT
GATCACGGTC AGCATGGTGC ATCCGATGCG CCGCAGTCCC GAGCTGATCT GGCGAAGTTC
GCCCACCTGC CTACCCGCGC ATCACGTGCC CGGGCCCAGT CAGACACGGC CCATCCCGCA
CCTCAAGCTG CAAGCCACTC CGTCGCAGCT GATGCGGCAC TGCCTCAAGA ACCACGCGGA
TACCAACCCA ACCCGGACAT GGTGATCCCA GGGCTTGTTG ATGAAGCACG CGACCCAGGT
CACCAGGGTG GGTTCCCGCA GCAGACACCA GCTCAGTACT ACCGGTCCGC CGCGAGCGCT
TTCAGCGCGC AAAGTGCACA CGAAGCGCAC GAACCTGAGG AGGACCGCAG CTATGGGATG
CCGCTTCCTC CGCAGCGTCC AGAGTCAGTG TACGAAGCGA CTCAAGGACC TGTTGACGAG
CAGCACAACT ACGGTCAACC AGCATCAGCA CCTTCCTGGC AAAACAACGC AGCCCAGGAA
CAACCGATGC GACCACAGTT CGCCCCGATC TTTGGTGACG GTGCCAGCGA ACCAGCAGCA
CCAGCAGCTC CCAACTTCGC TGACGTCGTG TCTGACCTGC CACAGGAAGA CACCAAATCA
AAGAAGAACG GCCTACGTGG CTGGTTGCGT AAAGGAAAGT CAACAGACAC CTCCGCGCAT
GAAACAGTTG CTGAGCCCAC GGCACCTCAG GGCTCGTACG GGCAACCACA GTTTGGACAG
TTCAGTGGTG GCCAACAGTT CCAACCAGCT CAGTCCCAAG GTCAACAGCC TTTCCGCCAA
CCCACTGCGC CATCAGCAGC TGAACCTTAT GTGCCTCAGG TACCACAACG GGTGTCAAGC
TATGGTGCAG GGTCGGCGTC TCACGCCGCC TCAGCCCCAT ACGCTGCCTC GGCCCCTGCC
GCCCCAGCTG CATACAGCGG CGGCACCTCA CAGTCGTGGG AACCCACGTA TGCTCCTTCC
GCTCAGGAAC CAGCAGTACG AGAGTTTCCG CAAGGTGGAT CAGGTGTCAC CCAGTGGCAA
CCACCCACCG ACCTGACCGT TGACGTCAAC TCAGCTTTTG CGTTGAAGTC AACAATCCAG
GAGCAGGCAC TTGCTGAACT CAGCCAGCTG TCCGCGTACC GCCCAAGCGA GGTTGACACC
AACGCTGCCG GGTCACTGAC CCGCCGTGTT CGGAGCACAG CCGCGCCTCA GGCACTCACT
GATGACCCGA CCACGCAGAA GATCAGTCGC GACGCGGCCG AACTTCGGGC ACGCCTCTCC
GCGTTCCAAT CTGCAACCAG CAGAGGACGC CGAGATGGTG CATCTGAGGG TCCACCTCAG
AATGAGCACG GGAATGACCG AAATGGCCAG TCGCAACTAC GTGTGCCAGA CTCTGCCACT
CGATACTGA
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| Protein sequence | MLKRLNVQNK ILATLAVPIL VILVAATVFA GQSISAWREA QQTKNVVDLV DSGQTFIEII
QNERYWAIEY RRGAAGAGEE WQKAIALRNQ ALDEVGSALR DIDTSRMSPE VQRAIDLALK
NTRAFLEAAE GQASRGAATT QVVSKAYTDA IDNILRVASQ LGNTVGDRRV GNAALAYVTT
TNYLDDTISE IPLISEALTV SRSNDGVNRV YRELATTVRL TNASRDDTRN TLNRLVGVDF
PSLKIASAQY TAIRQYLANG NIGAISGPLA EQWGELAQVE VEAVDPIVKA MMAEMKDAAN
DQLNAARTNS ILTIIAVLVV FAASLAIAYV TSRSITRPLR RLTESAERVK EELPRLVEQV
AIPGQGPDLD LEEIDIDSRD EVGQLAAAFN SVNHTTVEVA REQAALRGSI AEMFVNVARR
DHVLLNRQLG FLDELERAEE DPNILANLFR LDHLATRMRR NSESLLVLAG IDSGRRVRQP
MPMSDVVRTA SSEIELYDRI QLNLQSDPAM LGHNALNAAH LIAELLENAT NFSEPNTPVE
VTTDAGRNFV TVTIRDYGLG MSDDDIAEAN RKVASRSATD VIGVQRVGLF VVGRLADRLG
VHVAFARPND GSTGTVATLS FPWNLFTDAA YQDYQGRAPQ AGSQTYQQPQ APQPSSQFAQ
PQQPAQQANQ FGQPQQPQQQ QPQPQQPIQQ PAGYPVEEPP VVSEVDLNAL TDGQTNTGMP
RRRVSNAPTG QNQAFAPQQD FSGAPLGGGR PAAPAPQAPA QQAPAQGLPS RGGAQQQFAP
QQSAASALPS RGGNGNQGVG LSPDFGDDSP EIVLPPLATP TRTVSFDDDS APWQPEVIQE
ARPLVTRRPA VKEHVEETPL GPDASLAAQP ERRSAMFSNF RSFSAPQEGT EAQAPSAGSP
FAQPADDDDS TQVIDRVADS PRAEEVAEPW RGQQDTVTHS DHGQHGASDA PQSRADLAKF
AHLPTRASRA RAQSDTAHPA PQAASHSVAA DAALPQEPRG YQPNPDMVIP GLVDEARDPG
HQGGFPQQTP AQYYRSAASA FSAQSAHEAH EPEEDRSYGM PLPPQRPESV YEATQGPVDE
QHNYGQPASA PSWQNNAAQE QPMRPQFAPI FGDGASEPAA PAAPNFADVV SDLPQEDTKS
KKNGLRGWLR KGKSTDTSAH ETVAEPTAPQ GSYGQPQFGQ FSGGQQFQPA QSQGQQPFRQ
PTAPSAAEPY VPQVPQRVSS YGAGSASHAA SAPYAASAPA APAAYSGGTS QSWEPTYAPS
AQEPAVREFP QGGSGVTQWQ PPTDLTVDVN SAFALKSTIQ EQALAELSQL SAYRPSEVDT
NAAGSLTRRV RSTAAPQALT DDPTTQKISR DAAELRARLS AFQSATSRGR RDGASEGPPQ
NEHGNDRNGQ SQLRVPDSAT RY
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