| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0242 |
|---|
| Symbol | |
|---|
| ID | 8379437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 260564 |
|---|
| End bp | 261514 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 645002976 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003160219 |
|---|
| Protein GI | 256831492 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.544656 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCACCC ACGCCACCAC AACCGCCTGG GTGATCGCCC GATACCTCGG CAACGCCGTA
ACAACCCTCC TCGGTGCGAT CACCCTGGCA TTTGTTGTCC TCACTGCCGT GCCCGGCGAC
CCCGTTGACG TGATGCTTGG CCCTCTGTCC TCAGCAACCC CCGAAGCCCG CGCCACCATC
CGCGCTGACC TCGGACTCGA CCAACCCCTC CACATCCAAT ACCTCACCTA CATCAGCCGT
GTGCTCACCG GCGACCTGGG GATGTCCTAC CAACAACACC GACCCGTGGT TGCCATCATC
ACCGAACAAC TCGGTGCCAC CCTCGCCCTC GCCGCCGCAG CCCTCGCCCT CGCCGCCCTC
GTCGTATTCG CGGCAGCGTT TGTCACCCGA CGAGGCTGGA TGCGACGCAT CGCCGACACC
AGCGAACTCC TCGCCGTGTC CGCACCAGTG TTTTGGACCT CCCTCATCCT GGCATCAGTG
TTCTCCTACC AACTCGGGTG GTTTCCCATC GTGGGAGGAA CCGACGCTCA ACGCCTCATC
CTCCCCGCCG TTGCCCTCGC CCTCCCCCTC GCCGGAGTGA TGGCTCAAAT CCTGCGAACC
GGCCTCGATA CCGCCGCCAC CCAACCCTTC GCACTGACCG CCCTCGCGCG AGGCGCATCA
CCTCACCACC TCACCCGACA CCACCTCATG CGCCACGGGT TCGCCGCCAC CCTCACCATC
ACCGGGTACA TTGTGGGCAC GCTCATCGGT GGGGCCGTCA TCGTGGAAAC GATCTTCGCC
CGCGGCGGAA TAGGCAGGGT CACCCTCGAC GCAATCAGCG GCCGCGACCT GCCTGTCATC
ATGGGCGTCG TCATCCTCAG CGGAGTGGCG TTCATCGCCA TCAACACCAT GGTCGACATC
ATCGCCCGTA TTGTTGACCC CCGCCTCCGT GCCCGGTCCG CCAATGCGTA A
|
|---|
| Protein sequence | MRTHATTTAW VIARYLGNAV TTLLGAITLA FVVLTAVPGD PVDVMLGPLS SATPEARATI
RADLGLDQPL HIQYLTYISR VLTGDLGMSY QQHRPVVAII TEQLGATLAL AAAALALAAL
VVFAAAFVTR RGWMRRIADT SELLAVSAPV FWTSLILASV FSYQLGWFPI VGGTDAQRLI
LPAVALALPL AGVMAQILRT GLDTAATQPF ALTALARGAS PHHLTRHHLM RHGFAATLTI
TGYIVGTLIG GAVIVETIFA RGGIGRVTLD AISGRDLPVI MGVVILSGVA FIAINTMVDI
IARIVDPRLR ARSANA
|
|---|
| |