| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0240 |
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| Symbol | |
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| ID | 8379435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 254420 |
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| End bp | 258727 |
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| Gene Length | 4308 bp |
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| Protein Length | 1435 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645002974 |
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| Product | ATP-dependent helicase HrpA |
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| Protein accession | YP_003160217 |
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| Protein GI | 256831490 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAATGA TGTCCAGTCC GCGTTCTCAT TCCGCTCCTC GCCGCCGACG CCCGCCGCGT
CCGCGCACCG ATCACCCTTC GTTCGCTCAC GTGAACCTTG CGGCGTTGGC GGAACGCGCG
CAGAAGCGGT CACGTGTTGA CGTGGGGACG ATCACCTACC CGGAGTCGTT ACCGGTGTCA
GCGCAGCGGG AACGAATCGC GCAGGCGTTA CGTGAGCATC AAGTGATCAT TGTGGCGGGG
GAAACCGGGT CGGGAAAAAC CACGCAGATC CCAAAAATTG CGTTGGAATT AGGCCGGGGT
CGGGCCGGGC AGATTGGGCA CACTCAGCCA CGCCGTATCG CTGCACGGTC AGTCGCAGAG
CGGATCGCCG ATGAGCTGGG CACCCAGATC GGGAAGATCG TGGGGTATCA GGTTCGGTTC
ACTGACGAAT CGAGCGAGGA CACCCTCGTC AAGGTCATGA CGGACGGGAT TTTGCTCGCG
CAAATCCAAC GTGACCCGCA GTTACTCGCA TACGACACGC TCATTATTGA TGAGGCACAT
GAACGATCAT TGAACATTGA TTTCTTGTTG GGGTATCTGA CGAACCTGCT TCCGCAGCGC
CCGGACCTGA AAGTCATCAT CACGTCCGCG ACCATTGATT CCGCCCGGTT TGCTGAACAT
TTTGCGTCAC CTGGCCCGAA TGGTGAACGT GGCCCTGACG CGGTAGCGTC TGGGTTGGCA
ACGCCAGCAC CGGTCATTGA AGTATCAGGG CGCACCTACC CGGTTGAAAT CCGGTACCGC
CCGTTGGATG GCGAGGCCCT TGGTGTAGCC GATGGTCAAG GGAACCGCAG CAACGACGAC
CCTGATCTCA TGACCTCACT GTGTGCGGCC ACTGACGAAC TCATGCTCGA AGGCCCTGGG
GACATTTTGG TGTTTCTGTC GGGGGAACGC GATATTCACG ATGCGCACGA TGCACTGACC
GCGCACCTGG GTGCGCGTGC CACTGACCCG CGTGACCCTG GGTACACCGA AATCGTGCCG
TTGTTCGCCC GGTTGTCTGC TGCAGAACAG CACCGCATTT TCCAGTCGCA TAGTCACCGA
CGCATAGTCT TGGCCACAAA TATTGCGGAA ACCTCGTTGA CGGTCCCGGG TATTCGTTAC
GTGATTGACC CGGGAACTGC CCGTATTTCG CGGTACTCCA AAACAACAAA AGTGCAACGC
CTCCCCATTG AACCGATCTC ACAGGCGAGC GCCAATCAAC GCTCGGGCAG GTGTGGTCGT
GTGGCTGAAG GTATTGCCAT CCGGTTGTAC TCGCAGGAGG ATTTCCAGGC TCGCCCCGAG
TTCACGGAAC CCGAAATTTT GCGCACATCG TTGGCGTCAG TCATTTTGCA CATGGTGTCC
GTAGGGGTGG TGCGCACACC GGATGACATT GCTTCCTTCC CGTTTGTTGA CCCCCCAGAC
ACCAAAGCAG TGCGTGATGG GGTGGCGTTG CTTCAGGAAC TGTCAGCGTT ATCGTCGGGG
AAGCGGGGAA CAACATTAAC CCCGGTGGGC CGACAACTTG CGGCGCTCCC CATTGACCCC
CGCCTGGCAC GCATGATCGT GGAAGCGAAT CGCCGTGGCG TTGCCGGTGA GGTGCTCATT
ATTGCGGCAG CGCTGTCCAT TCAAGACCCA CGTGAACGCC CCGCTGAGGT GCGCGACGAA
GCCGATACGT GTCACCGTCG TTTTGTGGAA GGGCGCTCTG ATTTCCTCAC CTACCTCAAC
ATGTGGGAGT ACGTGCGCTC CCAACAAAAA GCGTTATCGT CCTCGGCGTT CCGCCGCATG
TGTCGGCGCG AGTACCTGAA CTTTCTCCGC ATCCGAGAAT GGCAGGATGT GGTCTCCCAG
TTGCGGGACA TGGCCCGGCC CTTGGGGATC ACCGTCACAC ACCGGTCCGC ACAACCCGTC
GGTGATGCAC TAACCACCAG TGAAGACACA TCAGTGGACA CCCGGTTTGT GTGGGACGGG
GAAGCGATCC ACCGATCCAT TTTAGCTGGG CTACTCTCCC AGATTGGGAT GCAGGAAAGC
ACAGACGTTT CAGCGACCCG CAAAGGCAAA GACGCAGCCC AAGACCGCCG GGCGGCACGC
ATGGCTCGCA ACGAGTATCT GGGTTCACGC GGCACAAAAT TCGCCATATT CCCTGGTTCC
TCACTGTCCC GCAAACCCCC TACCTGGGTG ATGGCTGCGC AATTAGTGGA AACGTCCCGG
CTGTGGGCTC GCGACGTCGC GGCCATCGAA CCGGAATGGG CCGAAGAACT CGCCCAAGGC
ATCGTGAAAC GCACGTATTC AGACCCAGCG TGGTCCACCA AACGAGGCGC AGCCATGGTC
CGAGAAAAGG TCATGCTGTA CGGGGTTCCC ATCGTCACCG AACGGCCAAT CCTCTACTCC
CACGTTGACC GCGACGCCGC ACGGGACATG TTCATCCGCC ACGCACTCGT TGACGGCCAA
TGGACCACCC ACCACGCATT CTGGCGGCAC AACAAAGCTG TCATCGCAGA GGTCGAAGAG
TTCTATGCCC GAACCCGCGC CACCCAACTA GAGGTTGACG ACACAGTTCT CTACGAGTTT
TACGATGCCC GCCTCCCCGA CTCTGTCGTA TCCGCCGCCC ACTTTGACCG CTGGTGGAAA
GACACCCGAA AAACAGAACC CACACTGTTA GACCTCCACC GCGACGACCT CCTCCCCGCA
GTCGATGACG AACAAGTCGA CGCCCTCTAC CCCACCTCCT GGCCACAAGG TGACCTCACA
TTCCCCATCA CCTACTCCTA CACCCCAGGC CACAGCACCG ACGGGTTAAC CGTTCACATC
CCGATTGAAG TACTCAACCG GGTAGAAGCC GGCGGATTCG ACTGGCTCGT CCCCGGGCTC
CTCACCGAAC TGTGCATCGC CACCATCAAA TCACTACCCA AAACGTGGCG ACGGCAACTC
GTCCCCGCCC CCGACACTGC CCGAGCCATC GCCACCTGGC TCACCGAACG CCACCCATCC
TGGGCTGACC TTGTCCGCGG CGGCAACCAC GCCCCACAAT TCCACGCCGA GTTCACCCAA
GCGGCCTACG CACTACGATC CGTGGATATC CCCGCTGACG CCTACACCCC GCACACCCTC
CCCCCACACG TGCGCATCAT GTTCTCCGTG GAACACACCG TCAACCGGGG GCGTCGCACA
GTCACTGAAG TACTCGACCA ATCCCCCAGC CTGGAACACC TCCAACGCAC ACTGTCTTCC
CACGCGCAAG AAGCAGTCGC CTCCGCTGTG CACACCGCCG TCAGCGCCGC CCTCGCCGAA
GCCCGCGCCG CCGCCACACC CACCCCAGTC CCGACCGGCT CAACCACCAC CCCACGCACA
CCTGTTCGCG CACAACACCA CGCATCGACA AGCACACCAC CACCCGCACC GGCCCTTGCC
GACAGCTCCG ACATCGTCAC CGACTGGCCC ACCGCCTACC CCACCATCCC CCTTATCCTC
GACGGCACCG GGCCCGGCGG ATTCGCTGTG CGCGGGTATC CCGCGCTCGC GGTCCACCCT
GATGGGGTTC GGTTGGATGT GCTTGCCCAT GACGCTCAAC AGGCCACCAT TCACGGGCAG
GCTGTGGTGG AGCTTGTGGT CGCTGCGACT GCTCTCAGTA CGAGCCGGAT CAGTACCCGC
TGGTCACCGC GCCAAGCGTT GGTCATGTCG ACGAGTCCTT ACCCGACAAC CGATGCGCTG
ATCACTGACC TGCAACGTGC CGCGATCCGT TCGTTGCTCC CTGACGCTGG CACCATTCGT
GATGTGGACA CGTACCGGGA GCGGGTGGTC CAGGTGCGGG CGCGTATTGA GGATGAGACG
TACCGGATAG CTGGGGATGT TGCTGCTGCT CTGACCGCTG TCAAGGACTT GGATGCGGCG
ATTAAGCAGC ACACGTCGTT GGCTCTCCTG GCGACCCTCA ACGACATTCG TGCGATCCGG
GACGCTCTGA TTTACCCTGG TTTCATTTCC CGCACACCCC CGGATCATGT TCGTCACCTG
GTGCGATACG TGCGAGCGCA GATTCACCGC CTTGATAAGG CGGTGGATTC TGTGCACCGC
GACCAGGAAG TGAGTTGGCG GTTGGCGGAG GTCACCCGGA TGTACGATGC GGCTGTCGCG
TCTGCGTCCG CCTCCCCTCA CGGGGTGTCC GAGCAGTTAG CGGATGTGCG CTGGATGATT
GAGGAGTTGC GGGTGTCCAT GTATGCCCAG CAGTTGGGCA CGGCACGGAC TGTCTCGGAG
AAGCGTGTCC TTAAGGCGAT CACGGCAGCC GCTCCGCCCC CGCGGTAA
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| Protein sequence | MGMMSSPRSH SAPRRRRPPR PRTDHPSFAH VNLAALAERA QKRSRVDVGT ITYPESLPVS
AQRERIAQAL REHQVIIVAG ETGSGKTTQI PKIALELGRG RAGQIGHTQP RRIAARSVAE
RIADELGTQI GKIVGYQVRF TDESSEDTLV KVMTDGILLA QIQRDPQLLA YDTLIIDEAH
ERSLNIDFLL GYLTNLLPQR PDLKVIITSA TIDSARFAEH FASPGPNGER GPDAVASGLA
TPAPVIEVSG RTYPVEIRYR PLDGEALGVA DGQGNRSNDD PDLMTSLCAA TDELMLEGPG
DILVFLSGER DIHDAHDALT AHLGARATDP RDPGYTEIVP LFARLSAAEQ HRIFQSHSHR
RIVLATNIAE TSLTVPGIRY VIDPGTARIS RYSKTTKVQR LPIEPISQAS ANQRSGRCGR
VAEGIAIRLY SQEDFQARPE FTEPEILRTS LASVILHMVS VGVVRTPDDI ASFPFVDPPD
TKAVRDGVAL LQELSALSSG KRGTTLTPVG RQLAALPIDP RLARMIVEAN RRGVAGEVLI
IAAALSIQDP RERPAEVRDE ADTCHRRFVE GRSDFLTYLN MWEYVRSQQK ALSSSAFRRM
CRREYLNFLR IREWQDVVSQ LRDMARPLGI TVTHRSAQPV GDALTTSEDT SVDTRFVWDG
EAIHRSILAG LLSQIGMQES TDVSATRKGK DAAQDRRAAR MARNEYLGSR GTKFAIFPGS
SLSRKPPTWV MAAQLVETSR LWARDVAAIE PEWAEELAQG IVKRTYSDPA WSTKRGAAMV
REKVMLYGVP IVTERPILYS HVDRDAARDM FIRHALVDGQ WTTHHAFWRH NKAVIAEVEE
FYARTRATQL EVDDTVLYEF YDARLPDSVV SAAHFDRWWK DTRKTEPTLL DLHRDDLLPA
VDDEQVDALY PTSWPQGDLT FPITYSYTPG HSTDGLTVHI PIEVLNRVEA GGFDWLVPGL
LTELCIATIK SLPKTWRRQL VPAPDTARAI ATWLTERHPS WADLVRGGNH APQFHAEFTQ
AAYALRSVDI PADAYTPHTL PPHVRIMFSV EHTVNRGRRT VTEVLDQSPS LEHLQRTLSS
HAQEAVASAV HTAVSAALAE ARAAATPTPV PTGSTTTPRT PVRAQHHAST STPPPAPALA
DSSDIVTDWP TAYPTIPLIL DGTGPGGFAV RGYPALAVHP DGVRLDVLAH DAQQATIHGQ
AVVELVVAAT ALSTSRISTR WSPRQALVMS TSPYPTTDAL ITDLQRAAIR SLLPDAGTIR
DVDTYRERVV QVRARIEDET YRIAGDVAAA LTAVKDLDAA IKQHTSLALL ATLNDIRAIR
DALIYPGFIS RTPPDHVRHL VRYVRAQIHR LDKAVDSVHR DQEVSWRLAE VTRMYDAAVA
SASASPHGVS EQLADVRWMI EELRVSMYAQ QLGTARTVSE KRVLKAITAA APPPR
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