| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0194 |
|---|
| Symbol | |
|---|
| ID | 8379389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | + |
|---|
| Start bp | 209248 |
|---|
| End bp | 210951 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645002928 |
|---|
| Product | ABC transporter, CydDC cysteine exporter (CydDC- E) family, permease/ATP-binding protein CydC |
|---|
| Protein accession | YP_003160171 |
|---|
| Protein GI | 256831444 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02868] thiol reductant ABC exporter, CydC subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.505034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAACCAGT CGTTGTCAGC GTTGTGGTGG AGTGCCACTC ATGTGCGTTC CGTGTTGTGG
CCGCTCATCA TCTCGACGGT GTGCCGCATC ATTGACCAGG TGTTGGCGGT GGCGCTGCTT
GCTGTTGCTG CGACCGGGGT AGCCCGAGCT GTCACAAGCA CCGTCCATGT GGGGCACCTG
GTTTTGGTGT TAGCAGGCTT GACGCTCATG AAAGCGATCG TGCGGTACGT CGAACAGTAC
TCAGGGCACT ATGTGGCGTT TAAAGCACTC GAAGAGCTGC GGGTTTTCGC TTTTTCGCGG
CTGTGGCCAG GTGCTCCAGC AAACACTGTC ACTGCGCACA CCGGTGACCT GCTCACCCGT
GTCACTAAAG ACATTGACCG GGTTGAAGTG TTTTTCGCTC ACACCATCGC CCCGGTCATC
TCAGCGGTCG TTGTCCCGGT GGGTGTCCTT GTCTGGTTGG GCGCCGCAAC GTCCCCTGTG
GTGGCGTGGA TCGCCGCTGT GGGAGTGTTC CTTGTGGGAG TTGTTACACC TACGGTGGGG
TGGTGGTTCA CCCAACGTGT CAGTGCTGGC CACGCCAGCG ACCGCACTGG GTTTTCCCAA
ACTGTCACTG AAACTGTCCA AGGTGTCGCC GACATTGTGG GATACGGCTA CGAACACCCA
TGGTTGGAAC GTTCTACCTC ATTGATTGAC ACCATCGCCC AGGACAATAC CCACCGCGGT
ACGATCACCG CGATTCGACG TTCCCTGACC GTCGCCTTCA CCCTCATCAC GGTGCTGCTT
GTCCTGGGGG ACGCCGGTGC ACGGTTTGTT CAAGGCACCT TCACGGTGGA GCAGTTAGCG
CTTGCTGTGG CGGTCACGTT GTCGAGTTTT TCGGCATCGA AGGCAATTGA CACGTTACTT
GCAGACCTTG ATGTTGCTGG TTCGGCTGCT GCCCGGTTGC GGGCGGCAGT ATCGACCCAG
CCCGCGGTTG TTGACCCGGC CCACCCTGTG TCGTTGCCTG CAGGTGGGTT GTCTGTTCAG
TGGGATGCGG TGACGTTTGC TTATCCCGGT GCGCCAGTGC CTGTGCTGAC CGATGTGTCG
TTGAGCATCC CGGCTGGGTC GCGTGCGGTC ATTGTGGGAC GGTCAGGGTC GGGGAAGTCC
ACACTGGCGC ATCTTCTGCT GCGTTTCTGG GATTGTGACC AGGGGCGGAT CTTGGTGGGG
GGTGTTCCTA TCACAGATGT GGTGCAGGAT GAGTTACGGG GGCGGGTGGC GTTGGTTTCT
CAACGTACTC ACTTGTTTGC GATGAGCATC GCCGATAACC TCCGCCTTGC TGACCCGTCG
GCTTCTGATG AACGGTTGCG GCAGGTGTGT GAGGTAGCGC AGCTTATGGA AGACATTGAC
CGGTTCCCCG ACGGTTGGGA CACCTTGGTG GGTGAGTTTG GCGAGTCGTT GTCCGGGGGG
CAGCGTCAAC GTGTTGCATT GGCGCGGGCG CTTCTGACTC CTGCCGATGT GTTTGTGCTG
GATGAATACA CCTCCAGCCT TGATGAGGTC ACTGCTCAGC GTCTTCGGGT GGCTTTGCGT
GGGGCTCGAC CGGGCGCAAC GCTCATTGAG ATTACCCACC GTCCCAGTGA TGCGGCGGAT
GCGGACCTGG TGTTCCAGGT CGATCACGGC ATTGTCACCC AGGTGACTGC TGAGGAAGTT
CTTGCAGCGG TCCCGGAGCG ATAG
|
|---|
| Protein sequence | MNQSLSALWW SATHVRSVLW PLIISTVCRI IDQVLAVALL AVAATGVARA VTSTVHVGHL
VLVLAGLTLM KAIVRYVEQY SGHYVAFKAL EELRVFAFSR LWPGAPANTV TAHTGDLLTR
VTKDIDRVEV FFAHTIAPVI SAVVVPVGVL VWLGAATSPV VAWIAAVGVF LVGVVTPTVG
WWFTQRVSAG HASDRTGFSQ TVTETVQGVA DIVGYGYEHP WLERSTSLID TIAQDNTHRG
TITAIRRSLT VAFTLITVLL VLGDAGARFV QGTFTVEQLA LAVAVTLSSF SASKAIDTLL
ADLDVAGSAA ARLRAAVSTQ PAVVDPAHPV SLPAGGLSVQ WDAVTFAYPG APVPVLTDVS
LSIPAGSRAV IVGRSGSGKS TLAHLLLRFW DCDQGRILVG GVPITDVVQD ELRGRVALVS
QRTHLFAMSI ADNLRLADPS ASDERLRQVC EVAQLMEDID RFPDGWDTLV GEFGESLSGG
QRQRVALARA LLTPADVFVL DEYTSSLDEV TAQRLRVALR GARPGATLIE ITHRPSDAAD
ADLVFQVDHG IVTQVTAEEV LAAVPER
|
|---|
| |