| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0189 |
|---|
| Symbol | |
|---|
| ID | 8379384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jonesia denitrificans DSM 20603 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013174 |
|---|
| Strand | - |
|---|
| Start bp | 202834 |
|---|
| End bp | 205167 |
|---|
| Gene Length | 2334 bp |
|---|
| Protein Length | 777 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 645002923 |
|---|
| Product | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase |
|---|
| Protein accession | YP_003160166 |
|---|
| Protein GI | 256831439 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
|---|
| TIGRFAM ID | [TIGR01371] 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTG TTTCTTCTGT TTTTCCGTCT GCCACGATTT TGGGGTACCC GCGTATTGGG
GACCGCCGCC AGCTCAAGCG TGCGTTGGAG TCGTTGTGGG CGGGTCGGTC CAATGCGGAT
GAGTTCGCTG CCACAACCCA CCAATTACGG GCTGCCACCC GGGAACGGTT AGCGGCCCGC
GGGTTGGGGC GCGATGACTC CTCGATCCCG GAGTCGTTTA GTTGGTATGA CCAGGTTCTT
GATGCGGCCG TGACGTTTGG GGTGATCCCA GACCGGTTCC GTTCGTTGGA TTGGTCGGGG
GACCTGGTTG GTGCGTACAG CACGGTGGCG CGTGGTGTGG GTGATGATGC CCCGTTAGAG
ATGACGAAGT GGTTCAACAC GAACTACCAC TATTTGGTTC CGGAAGTAGA TGAGTCCACC
CCGTTTGTGT TGAACCCGAC GTTGGTGACG TCGCTGGTCG ACGAGGCCCG TGCGCAGGGT
TTTGTCACCC GCCCAACGAT TGTTGGTCCG GTGACGTTCT TGGCGCTGTC CAAAGCTGCG
ACTTCCGCTT CCACGGGTTT TGACCCGTTG TCACGCCTGG ACGAGTTGGT GGGTGTGTAC
GTGGAGTTGC TGGCGGTTCT CGTTGAGCGT GGTGTGCAAT GGGTTCAGTT GGATGAGCCT
GCGTTGGTGT CAGAGAACTT GTCAGTGGAT GCGACCGCAT TAGAGCAAGC GTTTGTGGCC
GCTTATGCGC GTTTGACGTC TGCCGATGCG CGCCCCAACA TCCTAGTGAC CGCCCCGTTT
GCGTCGTTGG GTGCGTTGGC AGAACCTGTG CTGAACTCAG GTGTTGAAGC CGTTGCGGTG
GACCTCGTAC ACGGTGACCT TCCTGCGGCA GTCCCAGACG GGGTGACACT TGTTGCTGGC
GTGGTCAATG GTCGCAACGT GTGGCGGTGT GACCTAGATC AGGCTCGGCG TGTGCTTGAA
GGAGTACACG CGGGTTCAGT GGCAGTATCA ACGTCCACGA GTTTGCAGCA TGTTCCACAC
ACTGTTGCCG ACGAACCAAC ACTGGACCCC ACACTAGCGT CATGGTTGGC GTTCGCTGAC
GAAAAGATCA GCGAGGTTGT CACCTTAGCG CGAGGTCTCA CCCAAGGATG GGATGCGGTG
GCATCCGAGC TCGACGATGC GCGAACCGTG TTAGCCGCCC GGGCGGCAGC CCCTGGGGTG
ACCGTGCCGC ACGTGCGGGA ACGGGTTGCG GGAATCACCC ATGCTGACCT GGCTCGAACC
ACCATCGATG GAAAACGCGC ATCGATAGCC TCACGGGTCG CGCAACAGCA GGAACGACTT
CAACTTCCTC CACTGCCGAC CACAACAATT GGGTCCTTCC CACAAACAGC AGATATTCGC
CGGGCACGCG CCCAGTGGAC ACGCGGTGAC CTCACTGACG CGGACTACCA GGTGCAGATG
CGCACCGAAA TCGAACGTGT CATCCGCTTG CAGGAAGACC TGGGTCTTGA CGTTCTTGTC
CATGGCGAAG CGGAACGCAA CGACATGGTG CAGTACTTCG CAGAACACCT CGATGGTTTC
GTCGTCACCG AAAACGGGTG GGTACAGTCC TACGGTTCGC GGTGCACTCG CCCATCCATC
CAGTGGGGCG ACGTCTCCCG CCCAGCTCCC ATCACCACAC AATGGGCAAC CTACGCCCAG
TCACTGACTC CCAAACCCGT CAAAGGGATG CTCACCGGAC CAGTGACGAT CATGGCATGG
TCCTTCATCC GTGAAGACCT TCCACTCGCA GAAACAGCGA AACAAATTGG TCTGGCACTC
CGTGACGAAG TGGGTGACCT GGAAGCAGCA AACATTGCGG TCATCCAAGT GGACGAACCA
GCACTCCGCG AACTCCTCCC CTTGAAAAAG GCTGACCACA AAGACTACCT CGACTGGTCT
GTGTCCTCCT TCCGCCTTGC CACCACAGGT GTGCGCCCCG ACACCCAAAT CCACACCCAC
CTGTGCTACT CCGAGTTCAA CGACATCATC GATGCCATTG ACCACCTTGG GGCAGACGTC
ACCTCCATTG AGGCGGCCCG CTCACGCATG GAAGTCCTGG GGGCGCTCGC CGTTTCCGGG
TTTGGGCGCG GGGTTGGCCC GGGGATCTAT GACATCCACT CACCCCGAGT CCCCTCCGTC
GAAGAATTGG CGGAACTCCT TGACCTTGCG GTGCGTTCGG TTCGCCCAGA GTTGCTGTGG
GTGAACCCTG ATTGCGGGTT GAAAACCCGC GGATATGACG AAACAGTGGC GTCGTTACGC
AACCTTGTTC AAGCAGCCCA CGACGTGCGA GCACATGTGG CAGTGACCGC GTAA
|
|---|
| Protein sequence | MSFVSSVFPS ATILGYPRIG DRRQLKRALE SLWAGRSNAD EFAATTHQLR AATRERLAAR
GLGRDDSSIP ESFSWYDQVL DAAVTFGVIP DRFRSLDWSG DLVGAYSTVA RGVGDDAPLE
MTKWFNTNYH YLVPEVDEST PFVLNPTLVT SLVDEARAQG FVTRPTIVGP VTFLALSKAA
TSASTGFDPL SRLDELVGVY VELLAVLVER GVQWVQLDEP ALVSENLSVD ATALEQAFVA
AYARLTSADA RPNILVTAPF ASLGALAEPV LNSGVEAVAV DLVHGDLPAA VPDGVTLVAG
VVNGRNVWRC DLDQARRVLE GVHAGSVAVS TSTSLQHVPH TVADEPTLDP TLASWLAFAD
EKISEVVTLA RGLTQGWDAV ASELDDARTV LAARAAAPGV TVPHVRERVA GITHADLART
TIDGKRASIA SRVAQQQERL QLPPLPTTTI GSFPQTADIR RARAQWTRGD LTDADYQVQM
RTEIERVIRL QEDLGLDVLV HGEAERNDMV QYFAEHLDGF VVTENGWVQS YGSRCTRPSI
QWGDVSRPAP ITTQWATYAQ SLTPKPVKGM LTGPVTIMAW SFIREDLPLA ETAKQIGLAL
RDEVGDLEAA NIAVIQVDEP ALRELLPLKK ADHKDYLDWS VSSFRLATTG VRPDTQIHTH
LCYSEFNDII DAIDHLGADV TSIEAARSRM EVLGALAVSG FGRGVGPGIY DIHSPRVPSV
EELAELLDLA VRSVRPELLW VNPDCGLKTR GYDETVASLR NLVQAAHDVR AHVAVTA
|
|---|
| |