Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_0062 |
Symbol | |
ID | 8379259 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | + |
Start bp | 68694 |
End bp | 71258 |
Gene Length | 2565 bp |
Protein Length | 854 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645002797 |
Product | alpha-L-arabinofuranosidase B |
Protein accession | YP_003160041 |
Protein GI | 256831314 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.649597 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.531326 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAAGA AACTACACAC CATGACACAA GGATGGAGGC GCCAAAAAAC TCACGCCTCA CATCCACGAA AGGCACATCG AGGATCATCT ATTGGATCCT TCACGCTTGT GTGTGCACTG CTGACCGGGG CGTTGACAAG TGTTCCAGCA GTATCAGCGG TGGCCGCCCA GGCGGCTACA AGTCCTGGTG CCGGGCTGCT GGCCACGGCC GTGAACGACA CCTGCGTTTC GGGGACATGG TCGACAGACC CAGCGGTCAA GATGTTCCCA GAGCAGCACA CCACGGAGCA CTTCTCATTC CGGTGGAAGA GTTCCGAGGT CTCAAAAACT GATGTTCAGG CCGCCGGTAA AGCGTTGGAG GAAATCTGGG CACAGTTCAT GGCGGAACCA ATTGCGTTCC CCGAACCGCA CTGTGATTCG GCAACGAAAC GTCGCGTCAA CGTGGAAATT GATCCAAGTT ACGCGCTCAC CGGTGGCGTC ACCTCTGAAG GTGCAATGGG CATGTGGATT GGGTCTGGGG CTCTCAAGGA CCGGTGGGGG CTGGCACATG AGTTGACCCA CGCTTTACAG GGGTCAACCA AGGCTTTTCG TGATTCCCCT TACGTTGGGT GGTTGTGGGA GTCGCACGCA AACTGGATGA CGCATCAGCT CCCGGAGTTC CGCACGAACC CGCACTGCTC TGAGCTGTTC GCGAATCACA CAAGTCTCTA CTACGGTTCA ACGCGAAATA ACTACTGCAA CTGGCAGTTT TGGGAGCATC TGAAAGTAAC CTATGGCTCA GACACTGTTC AGGGTTTGTG GGCCAACGCC CCAAAGCAGG GTGCCGCAAA TTATCGTGAC GCCGACCCAT TTTCCGTGCT GATGGAACAG CAGGGGTGGT CGCTGGAGCG TCTGAACGAT GAGTTCGGTC TGTGGGCGAT GAAGAACGTC CTATGGGACT ACGGGACGAA CACGTACCGT CAAGCGTATG GCGGGTATGA CAACCTCACC GGCGATCGCA CGTTACGTGT GACCCCTATG ACCCCAGTTG AGGGGGTGAC GGGTCGGTAT GCGGTTCCGT TTGAGGCTGC TCCCCAACGG TGGGGTTACA ACACGGTCCG GTTAACACCC GATTCGGGGG CCACATCGGT GACCGTGGGT TTCCGTGGGA TTGTCCAAGA CACGGCAGCC ACCAGCACGC TGCCCGGGTT CGCGAACGAA CCAGCCACCG TGGGGTCGCC TCATTCGGGG TGGCGTTGGG GTGTTGTGGT GGAGGGCGCT GACGGGAAAG CCCGCTACAG CGAGTTACAG AAATCTGTGA GCGGAAGCGT GACTGTACCG CTACGTTCAG GGGATCGTGG CGTGTACCTC ACTGTTCTTG CTGCTCCGAC CGCCCAGCAG AAAATTGCTC ACAACCAGCC ATTTTATTCA ATTTACCGGT ACCCGTGGAC TATCGATGTG GCGGGTGCGA AACCAACAGA GCCTACGAAA CCAGCAGGCA AGAAACACCC CAACGGTGGC GGCTGGGTGG CCAACGGTGC GAATGTCGCG GCGACCGCGT TTGTTGGTCC GAACGCCTGC GTGCTGGGTG GAACAGTGTC AGGGCAGGCA CGCATCGAAG ATCATGCCAC AGTGATGAGC GGAACCGTGA CAGACAAAGC GATTGTGCGC GGGGTTTCTC TGATTCGTGG GCAAGCAACG ATTAGTGGGA ACGCCGTGGT GAATACGACG TTCCGCGGTG TGGGGGCGTT CCAATCCCGA ATCACAGTCT CTGGTAATGC GCAGATTCAC GGTGACAACG AACTGTGGCC CACCAGCATT AACTCTGGTG TGTGGTATGG GTTCGTGGAT GACAACACAC TGTCCAGCCA CCCGATGCGT CAGTTGTCGG CACCTGTCGC TGAGGTGACT CGGCGGCCGT CGACTGCTGA CCTGGCCGCG GTAGCGCCCG CATCTACACC TGCGCCAACA ACCGAACCAA CGGGGGAAGC AACCACGGCT CCAACAGCTG AACCGACTGT GGAACCCACA GCTGAACCGA CGGCGGAACC GAGTTCACCC CCTGCCACCC CTGCACCGAA CCCTGCACCA ACGAATCCCA CCCCAACAAA CCCGGTCCCG GCGCCTGTTC CGGTTCCGAG TCCGCAACCT GATGCGGGTG ACCCGGTTGT AGGTTCCACC GTGACAGTGG CGTCGTACAA CTACCCGGAG CGAAGTGTGC GGCACCAACA TTATGTGGGC CGTATCGACG CTACCCGTGA CAGCGAGGAC TGGCAGTGGA AGAAAGTGAC AGGTCTTGCT CCAGGTGGGG GCGGTACGGT GTCGTTCGAG TCGGTGAACT TCCCTGGGTA CTTCTTAGTT GCTGTGGGTC GCGACGTGAA GTTGCTCCGC AATGATGGGA CGACCGGGTT CGCGCGCTCA GCAACGTTCA CGCAGGTCAA TGGGCTTGCC GATGCGTCAG CTCTGTCCTT TGAGTCCCTC GCGGCACCTG GACGTTACCT TCGGCACTAC GGATTCCAAC TCTATGTTGA CCCAGTGTTT ACGCCGGTTG CGCGGGCTGA TGCGACATGG CGGGTGATGA ATTAG
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Protein sequence | MAKKLHTMTQ GWRRQKTHAS HPRKAHRGSS IGSFTLVCAL LTGALTSVPA VSAVAAQAAT SPGAGLLATA VNDTCVSGTW STDPAVKMFP EQHTTEHFSF RWKSSEVSKT DVQAAGKALE EIWAQFMAEP IAFPEPHCDS ATKRRVNVEI DPSYALTGGV TSEGAMGMWI GSGALKDRWG LAHELTHALQ GSTKAFRDSP YVGWLWESHA NWMTHQLPEF RTNPHCSELF ANHTSLYYGS TRNNYCNWQF WEHLKVTYGS DTVQGLWANA PKQGAANYRD ADPFSVLMEQ QGWSLERLND EFGLWAMKNV LWDYGTNTYR QAYGGYDNLT GDRTLRVTPM TPVEGVTGRY AVPFEAAPQR WGYNTVRLTP DSGATSVTVG FRGIVQDTAA TSTLPGFANE PATVGSPHSG WRWGVVVEGA DGKARYSELQ KSVSGSVTVP LRSGDRGVYL TVLAAPTAQQ KIAHNQPFYS IYRYPWTIDV AGAKPTEPTK PAGKKHPNGG GWVANGANVA ATAFVGPNAC VLGGTVSGQA RIEDHATVMS GTVTDKAIVR GVSLIRGQAT ISGNAVVNTT FRGVGAFQSR ITVSGNAQIH GDNELWPTSI NSGVWYGFVD DNTLSSHPMR QLSAPVAEVT RRPSTADLAA VAPASTPAPT TEPTGEATTA PTAEPTVEPT AEPTAEPSSP PATPAPNPAP TNPTPTNPVP APVPVPSPQP DAGDPVVGST VTVASYNYPE RSVRHQHYVG RIDATRDSED WQWKKVTGLA PGGGGTVSFE SVNFPGYFLV AVGRDVKLLR NDGTTGFARS ATFTQVNGLA DASALSFESL AAPGRYLRHY GFQLYVDPVF TPVARADATW RVMN
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