| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jden_0022 |
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| Symbol | |
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| ID | 8379222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jonesia denitrificans DSM 20603 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013174 |
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| Strand | - |
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| Start bp | 23421 |
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| End bp | 25163 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 645002759 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_003160004 |
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| Protein GI | 256831277 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.499144 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTACCC ACACGTCCGA TACCTCAGAT TCGGTGCACC CGCCGGTTGA CGCCCCGACA
ACTACTGATG CGCCCGTTGC GCGGCTCGTG TTCTGGCCCG CCGCGATCAT AGTTGCAATT
TTCGCAGCGT TTGCAATCAT TGCGCCGGAC TCTGCTGAGA AACTTTTCTC GAACATTCAG
ACAAACGTTA TTGACTCATT CAGCTGGTAC TACGTCCTCA TCGCAGCAGG TTTTGTTGTT
TTTTGCCTTT ACATTGGGTT CTCTAAATAC GGTGATATCA AGCTCGGTAA AGACGATGAT
GACCCTGAGT TCTCCAACAT GTCCTGGCTG GCGCTTCTGT TTGCCGCTGG GATGGGTATC
GGGTTGGTGT TTTACGGGTT AAGCGAGCCG CTCTCGCACT TCGCGAACCC GCGCCCTGGG
GTGGAGGGGA CCCCAGAACA ATTGGCCCAG TATTCACTGC GACAAACATA CCTGCACTGG
GGTGTGCACG CCTGGTCAAT TTATGTTGTT GTCGGGCTTG CTCTGGCCTA CGCCATCCAC
CGGCGTGGAC GCCCTATTTC TATCCGGTAC ACCCTCGAAC CGCTCCTTGG TCGGCGTATT
CATGGAAAAG CCGGGGACAT CATCGACATT ACCGCGCTCG TTGGCACGAT CTTTGGTGTG
GCCACGTCCT TGGGGTTGGG TGTCCTCCAG ATCGCCGCTG GACTTGATGC TATTGACTTG
GCTGAACCTT CCCATTCGTT GGAAATCGGC ATCATTGTTG TCATCACAGG TTTTGTTATT
TTCTCCGTGG TCACAGGTGT CACCAAGGGC ATGAAGTGGT TGTCGAACAT CAACCTGGTG
ATCGCCGCCC TCGTCATGCT GTTTGTGTTG TTCTCCGGCC CCACCGTGTT TTTGCTCCGT
GAGTTTGTGC AATCACTGGG GAACTACCTC CAAAACTTTG TGGGCTTGTC GTTCACAGTG
TCGGCTTTCC AAGGTGAAGC AGGGGAAATC TGGCAGCGCG GGTGGACTAC GTTCTACTGG
GGTTGGTGGA TGTCATGGGC ACCATTTGTT GGCGTGTTCA TTGCCCGTAT TTCCCGTGGG
CGCACTGTGC GCCAGTTTGT TGTTGGGGTG CTGCTTGTTC CCACGATGGT GACGTTCTTG
TGGTTCTCTG TTATTGGTGG GACCGGAATT TACTTTGAGC TCACGGGGCG CGCCGAATTG
ATCAACCCTG ATGGAAGTGT CGATGTTGAA GGATCGTTGT TCGCCTTGCT CGGTGAACTG
CCGGGAACCA CGTTCCTCAC CATTGGGGTG CTGCTCCTCA TCGCGATTTT CTTCATTACC
TCAGCTGATT CTGGGTCTCT GGTCATGTCG ATGATTGCCT CTGGGGGGCA GGTGGAACCA
CCGACCTGGT TGCGCGTGTT CTTTGCGTGC ATCAGTTCTG TGCTTGCGAT CGCGTTGTTG
TTGGCCGGTG GTCTCACTGC CTTGCAAACG GTGGCGATTT TGATTGCGTT GCCGTTCTCG
TTTGTCATGA TTGGCATGTG CTGGGCAACG ATCACCGCGT TTAACCGGGA GATGCGCGCC
TACGAGAAAG CGCAGCGTGC CGCCTTCCGC GACCACATTG GTGACTATTA CGGTCTGGAA
GTCGAAGAAC CCACTGAACG TGACCCCGCG TCACGGTTGC GGCTACCGAA ACTGCGCCGG
AAAGTGAAAC CAACGCACGC TGCCACAGCA CAAGAAACCC CAGAGACACC ACCCGTGGAA
TAG
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| Protein sequence | MSTHTSDTSD SVHPPVDAPT TTDAPVARLV FWPAAIIVAI FAAFAIIAPD SAEKLFSNIQ
TNVIDSFSWY YVLIAAGFVV FCLYIGFSKY GDIKLGKDDD DPEFSNMSWL ALLFAAGMGI
GLVFYGLSEP LSHFANPRPG VEGTPEQLAQ YSLRQTYLHW GVHAWSIYVV VGLALAYAIH
RRGRPISIRY TLEPLLGRRI HGKAGDIIDI TALVGTIFGV ATSLGLGVLQ IAAGLDAIDL
AEPSHSLEIG IIVVITGFVI FSVVTGVTKG MKWLSNINLV IAALVMLFVL FSGPTVFLLR
EFVQSLGNYL QNFVGLSFTV SAFQGEAGEI WQRGWTTFYW GWWMSWAPFV GVFIARISRG
RTVRQFVVGV LLVPTMVTFL WFSVIGGTGI YFELTGRAEL INPDGSVDVE GSLFALLGEL
PGTTFLTIGV LLLIAIFFIT SADSGSLVMS MIASGGQVEP PTWLRVFFAC ISSVLAIALL
LAGGLTALQT VAILIALPFS FVMIGMCWAT ITAFNREMRA YEKAQRAAFR DHIGDYYGLE
VEEPTERDPA SRLRLPKLRR KVKPTHAATA QETPETPPVE
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