| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_3416 |
|---|
| Symbol | |
|---|
| ID | 8379117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | + |
|---|
| Start bp | 3854368 |
|---|
| End bp | 3857004 |
|---|
| Gene Length | 2637 bp |
|---|
| Protein Length | 878 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645002653 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_003159904 |
|---|
| Protein GI | 256831176 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATC TTTCTTTCCG GAACTTCGGG CATCAGAGCC AGCGGCGGGT CTTGGGGCTG
CTGACGCTCA TGCTCCTGGG AGTTATGGCG CTGGGGGCCA AGGAAGCCTA TCGCTACAGG
GTCATTCGGG ATCATCAGTT GCTGATGAAG GCGGAGCAGG CTCATCTGGA TCTGGTCCAG
ACTTTTCGCG TTGCCATGAG CTCGGCGCGT TTGGGCTTTG ATCGCCTGTC TTCGGCCCCG
GACTTGCCCG GTCTTTTTGC TCTTGAAGTC GAGACGGACA AGGCGCTCAT GCTTTCGCGG
CGGGCTCTGG TCGTGATGCA CCAGGGCGGC GAGCTTGGCT TGGAGGGCCT TGAAGGACAG
CCTGTGGGCC AGATCATCAC TCTGGCCCAG CCTATGCCGC CTGAGCTTCT TGAAGAGGCC
TCGAAGCTCG TACCCGTGGT GCGGGACATT TCGGACCAGG GGCATTTTAT GATCCGCACC
CAGATGCACG CCCTGGACGC GTCGAAAAAC GAGGGGGTCA GTCCGGATCT GGCGGCCGTC
CGTGAACAGA CGGAAGTTTT GTTCAGCCAG GCGACGAAAA CGGCCGAAAT CCTTCAGCGC
GACATCAGAG TCCGGATCGC GCGGGCCATC GACAACCACC AGACCAACGC CAATCGAATC
CTGGCCATGA CTTGCGGGTT GGTGGTTCTT TTGCTGACGG GCATGGTCAC GCTGTGCGTG
CGCATCATGC TCTCCTTTGC GGACATGCTC CGGTCGCGGG AAAAAGACGG CGCGGCCGTG
GTGGAAGCCA ACGCGGGCAT GGAAAGGATT TTGGAGGCAT TGCCGGTGGG CATCGCCATC
CTGGGCCAGG ACCGGATTAT CCGCCGGGTC AACCTGGCCG CGACCAATCT GCTTGATATC
GAGCCCGGCT GGTTTTTCGA GCGCCACGTC CCTTGGGACA TGTTCTATGA GAATGTGCAA
AGCGATGACC CTGAAAGGCA GCCCCGGATC GAATTCGAGC ACGAGGTGCG CATGCGCGCG
CTGGAAGGGC GGACCCTGGA TGTGATCAAA AGCTCCATCC CGGTCATTCT GCAGGGGGAA
ACCCTGATCC TTGAGGTCTT CATGGACGTG ACCCAGCGCA AGCAGGCCGA GCGCGAGCTG
TTGCAGGAAA AATCGCGTCT GGAGTCGCTT CTTTCCGGGA TAAATGAAGG CGTGGCCCTG
ACCGACGAGC GCGGCGGCGT GCTTGAAGTC AACGAGAGCC TGTGTCGAAT TCTGGGTGCC
AAGGCCCATG ATCTGCTGGG CCGAAAAGTC TGGGACCTTT TCCCCGACGG GATTCTCGGG
ACGCAGCTGG CGCAGGGGTT GCGCGCCCTG CAGGAAAATC CCCGGACCCG GTTGCGTGAA
ATCCAGCTGG AATCGTTCCG GGACATGGCG CTGGTGGTGC GCATGCAGCC TGTTCTGGGC
GAGGAAGCTT TTGGCGGCAT GATCGTCAGC GTCATCGAGG TCACGGCTAT TGTCGATGCC
CGGCGCAGGG CCGAAGCCGC TTCCCAGGCG AAAAGCATGT TTCTGGCCAA CATGAGTCAC
GAAATCCGTA CGCCCATGAA TTCCATCCTC GGCCATGGGG AATTGCTGGC CCGGACCCGC
CTTGATACCG AACAGGCGGA TTGCGTGCAG GGGATCCGCG TTTGCGCCGA GAGCCTTCTG
GTCATCATCA ACGACATCCT TGATTTTTCC AAGATAGAGG CCGGCATGCT GCGCATTGCG
CCCGAGGATG TCGATTTGGG TGGGCTGCTT GCGCGCGTGC GGACCATGCT TAGCGAGCAG
GCGCAAAAAA AAGGTCTTGA TTTGCAGTTG GTTACTGCCG GATTGCCGCA GGTGGTGAGT
ACGGATGCCG GCCGATTGAC GCAGATCCTG GTCAACCTGG TCGGCAACGC CATCAAATTC
ACGGAGCATG GCGGCGTGGA GCTTTCCGTC CGCGGGGAGG CCCACGCGGG AGGCAAGGCC
GCGCTTTGTT TTTCCGTGCG CGACACCGGG ATCGGCATTT CTGCGGACCG GCAGAAGGGA
ATTTTTGTCT CTTTTGAACA GGCGGATGGC TCCCTGACCC GTGAGTACGG CGGAACGGGC
CTGGGTCTGA CCATCGCCAA CAGTCTGGTC CGCCTGCTCG GCGGCAGCGG TATCTCGGTA
AAAAGTCAGA CCGGCCAGGG CAGTACTTTT TCCTTCACCC TGGTCATGAA CGTGTCCGCG
CCGGCACCGG CGCAAGAACT CGCTGCCATT GACGGCCAGG AGCGTTCTTT CGGTCGGGTC
CGGGTTTTGG CGGCAGAGGA CAACCCGTTC AACCGGGGCC TGCTGGTGAA GATGCTCAAC
ACTCTGAACG TAAGCGATAT CCAGATGGTC GAAAATGGGC AGGACGCGGT TGATGCCCTT
GCGGCAGGGC AGGCCTTCGA CATCGTGCTC ATGGATATCC AGATGCCGCT CATGGACGGA
CTGGAAGCCA CCAGACAAAT CAGGGCCATG GGGCTGAACG TGCCCATCAT CGCCCTGACC
GCCCACGCCC TGGAGTCGGA TCAGCGCAAG AGTTTGGAGG CGGGCATGAA CGGGCACCTG
GCCAAGCCTT ACAGATTGCA GGATCTGGTC GAGACTCTGA GCACATGGTG TTCTTGA
|
|---|
| Protein sequence | MKNLSFRNFG HQSQRRVLGL LTLMLLGVMA LGAKEAYRYR VIRDHQLLMK AEQAHLDLVQ
TFRVAMSSAR LGFDRLSSAP DLPGLFALEV ETDKALMLSR RALVVMHQGG ELGLEGLEGQ
PVGQIITLAQ PMPPELLEEA SKLVPVVRDI SDQGHFMIRT QMHALDASKN EGVSPDLAAV
REQTEVLFSQ ATKTAEILQR DIRVRIARAI DNHQTNANRI LAMTCGLVVL LLTGMVTLCV
RIMLSFADML RSREKDGAAV VEANAGMERI LEALPVGIAI LGQDRIIRRV NLAATNLLDI
EPGWFFERHV PWDMFYENVQ SDDPERQPRI EFEHEVRMRA LEGRTLDVIK SSIPVILQGE
TLILEVFMDV TQRKQAEREL LQEKSRLESL LSGINEGVAL TDERGGVLEV NESLCRILGA
KAHDLLGRKV WDLFPDGILG TQLAQGLRAL QENPRTRLRE IQLESFRDMA LVVRMQPVLG
EEAFGGMIVS VIEVTAIVDA RRRAEAASQA KSMFLANMSH EIRTPMNSIL GHGELLARTR
LDTEQADCVQ GIRVCAESLL VIINDILDFS KIEAGMLRIA PEDVDLGGLL ARVRTMLSEQ
AQKKGLDLQL VTAGLPQVVS TDAGRLTQIL VNLVGNAIKF TEHGGVELSV RGEAHAGGKA
ALCFSVRDTG IGISADRQKG IFVSFEQADG SLTREYGGTG LGLTIANSLV RLLGGSGISV
KSQTGQGSTF SFTLVMNVSA PAPAQELAAI DGQERSFGRV RVLAAEDNPF NRGLLVKMLN
TLNVSDIQMV ENGQDAVDAL AAGQAFDIVL MDIQMPLMDG LEATRQIRAM GLNVPIIALT
AHALESDQRK SLEAGMNGHL AKPYRLQDLV ETLSTWCS
|
|---|
| |