| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_3371 |
|---|
| Symbol | |
|---|
| ID | 8379068 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | + |
|---|
| Start bp | 3804154 |
|---|
| End bp | 3805713 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645002604 |
|---|
| Product | phosphodiesterase |
|---|
| Protein accession | YP_003159859 |
|---|
| Protein GI | 256831131 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1418] Predicted HD superfamily hydrolase |
|---|
| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR03319] conserved hypothetical protein YmdA/YtgF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCC AAATCATAAT CACCGCTTTT ATTTGCACCG GAATTGGTGC GGTTGCGGGT
TTTTTGTTCA AGAAATACAT CACCGATCAA GAGAATGACG ACGCGCGCAA ATTGTCCGAG
CGGATTCTGG ATGAAGCCAA GAAGGATGCG CAGGCGCACA AGAAAGAGGT TTTGCTCCAG
GCTCAGGACG AGGTTTTCGC CCTGAAGAAG GAAGTCGAAC AGGATGCTAA GGACCGAGAG
CGCGAGCTGA AAAAGAACGA GGCCAGGTTG CAGGCCAAGG AAGAGCGTCT GGAAAAGAAG
GTGGAATCTC TGGCTCTGAA GGAAAGCGAG CTGGTCAGCC TGGAGAAGAA GGTTGCCAAG
CAGGAGCGCG CCGTCGAGGA GAAGGAGGAG GGGTTGCAGG AATTGATCGC CGCCCAGCAG
ACCCGCCTGG AGGAAATTTC AGGTTTGACC GGTGAAGAGG CCCGCGCCCG CCTCATGCAG
GAAATTGAGA GCAAGGCACG CCATGAGGCG GCCAAGATGG TGCGGGTGAT CGAGGTCGAA
GCGCAGGAGA CCGCGCACCG CAAGGCGCAG ATGATCATTG CTAGCGCGGT CCAGCGTTAC
GCTGGCGATT ATGTCTCCGA ACATACGGTC AGCTCCGTGG AGCTGCCCAG CGAAGACATG
AAGGGGCGCA TTATCGGTCG CGAAGGCCGC AACATCCGGG CCATCGAAGC GGCCACGGGT
GTTGATCTGA TCATCGACGA CACGCCGGAA ACGGTCATTT TGTCCGCATA CAACCCGCTG
CGCCGCGAGG TGGCCAAGAG GTCGCTCGAA AGACTGATCA GCGATGGCCG CATTCATCCC
GCGCGTATCG AGGATATCGT CAAGAAGGTT GAAAAGGAGA TGGATGTCCA GATCCGCGAG
ATTGGCGAGC AGGCCACTTT CGATCTCGGC GTGCACGGCA TTCATCCCGA GATAGTGAGG
CTGCTGGGCC AGTTGCGTTT CCGCACGAGT TTCACCCAGA ATGTTCTGCA GCATTCCCTT
GAGGTGGCTT TTTTGTGCGG AATCATGGCC GCCGAGCTTG GGCTGGACAT TAAGAAGGCC
AAGCGGGCCG GGTTGCTGCA CGACCTGGGC AAGGCCGTGG ACCACGAAGT CGAGGGTCCG
CACGCGCTGA TCGGCGCTGA TCTGGCCAAG AAATACAATG AGTCCGCCGA AATCGTGCAC
GCCATCGCCG CGCATCACGA GGATGTCCCG CCTAAGTCCG TTTATGCCGT GTTGGTCCAG
GCCGCGGACA GTCTCTCCGG AGCCCGCCCC GGCGCGCGCA AGGAGCTTCT TGAGAGCTAT
GTGAAGCGTC TGGAGGAACT CGAAGGGATT GCCACCGGAT TTGCCGGCGT CAGCAGAGCC
TTTGCCATTC AGGCCGGCAG GGAAGTTCGG GTCATGGTGG ACTGCGAGGC GGTCAACGAC
GACCAGATTT ACATGCTGAG CAAGGACATC GCCAAGCAGA TCGAAGAGAA AATGACCTAT
CCGGGTCAAA TCCGGGTTAC GGTCATCCGC GAGAAGAGGG CAGTGGGCAT TGCTAAATAG
|
|---|
| Protein sequence | MTSQIIITAF ICTGIGAVAG FLFKKYITDQ ENDDARKLSE RILDEAKKDA QAHKKEVLLQ
AQDEVFALKK EVEQDAKDRE RELKKNEARL QAKEERLEKK VESLALKESE LVSLEKKVAK
QERAVEEKEE GLQELIAAQQ TRLEEISGLT GEEARARLMQ EIESKARHEA AKMVRVIEVE
AQETAHRKAQ MIIASAVQRY AGDYVSEHTV SSVELPSEDM KGRIIGREGR NIRAIEAATG
VDLIIDDTPE TVILSAYNPL RREVAKRSLE RLISDGRIHP ARIEDIVKKV EKEMDVQIRE
IGEQATFDLG VHGIHPEIVR LLGQLRFRTS FTQNVLQHSL EVAFLCGIMA AELGLDIKKA
KRAGLLHDLG KAVDHEVEGP HALIGADLAK KYNESAEIVH AIAAHHEDVP PKSVYAVLVQ
AADSLSGARP GARKELLESY VKRLEELEGI ATGFAGVSRA FAIQAGREVR VMVDCEAVND
DQIYMLSKDI AKQIEEKMTY PGQIRVTVIR EKRAVGIAK
|
|---|
| |