| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_2789 |
|---|
| Symbol | lpxC |
|---|
| ID | 8378477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | - |
|---|
| Start bp | 3169957 |
|---|
| End bp | 3170880 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 645002018 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
|---|
| Protein accession | YP_003159281 |
|---|
| Protein GI | 256830553 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|
| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.620639 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAGA CTACACTACG AAAAGAAGTT CGATGCTCCG GTGTCGGTTT GCATAGCGGC
CAGAAGGTTG AGATGGTGCT CAAGCCCGCG CCTGCCGATA CGGGAGTTAT TTTTTCGCTG
TTGACCAAAA GTGGCCGTCA GGTCGTGGTG CCGGAACCTG GACGGGTTGT GGGCACAGGA
CTGGCTACGA CTTTGGGTAC CGAAAGGGCC AAGGTTTCCA CGGTGGAGCA CCTCCTGGCC
GCCTTGGTCG GTTTGGAAAT AGACAATGTT CTGGTCGAAG TTGATGGAGA AGAAATCCCC
ATTCTTGACG GGAGCGCTTC CGTATACGTG TATCTGATCA ATTCCGCCGG AATCCGGGTG
CTCGATCGTC CGCGCGAGAT CGCCAGGATC AAGCGGTCCC TTGTCTTCGA GCAGGAGGGA
AAGCGTGTCG TGGCCAAGCC ATATAACGGC TTGAAGATCG ACTACCGCAT AAGTTTCCCC
CATCCGCAGA TCGGTACGCA GAATTTTTGT TTCGAGTCGA CTCCGCTGAC ATTCTCCCAC
CGCATCGCCC GCGCCAGAAC ATTTGGTTTC ATGAAGGATG TTGAGTGGTT GCAGAAAAAT
GGCCTGGCCC TTGGCGGGTC GCTTGAAAAT GCGGTTGTTT TCGATGACTA CGGTGTGGTC
AACCCCGAGG GGTTGCGTTT TGCGGACGAA ATGGTGCGTC ACAAAATTTT GGATTTCATG
GGCGACATCG CTGTCGGCAG TCATCGCTTG TGGGGCCATT TTGAAGTCTC CTGCTCCGGG
CATGACTTCA ATAATAAATT CATGCGTTAT ATTTTTGATA ACCAGTCGGA ATATCTGGAC
TTTGTCGCTC TTGAAGAGCC TGCGAGCGTC TCCAGCTGTC CCGACCCCGT GCTTTTGCCT
GCCGGGGTGC CTGCCTGGGC TTGA
|
|---|
| Protein sequence | MKQTTLRKEV RCSGVGLHSG QKVEMVLKPA PADTGVIFSL LTKSGRQVVV PEPGRVVGTG
LATTLGTERA KVSTVEHLLA ALVGLEIDNV LVEVDGEEIP ILDGSASVYV YLINSAGIRV
LDRPREIARI KRSLVFEQEG KRVVAKPYNG LKIDYRISFP HPQIGTQNFC FESTPLTFSH
RIARARTFGF MKDVEWLQKN GLALGGSLEN AVVFDDYGVV NPEGLRFADE MVRHKILDFM
GDIAVGSHRL WGHFEVSCSG HDFNNKFMRY IFDNQSEYLD FVALEEPASV SSCPDPVLLP
AGVPAWA
|
|---|
| |