| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_2425 |
|---|
| Symbol | |
|---|
| ID | 8378103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | + |
|---|
| Start bp | 2780512 |
|---|
| End bp | 2782131 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 645001647 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_003158920 |
|---|
| Protein GI | 256830192 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACCA TCCAGATCTA CGACACCACC CTGCGCGACG GCACCCAATC CGAAGAGCTG
AACCTGTCCA CCGAAGACAA ACTGCGCATC GCCACCAGAC TCGATCAGCT TGGCGTGGCC
TATATCGAAG GCGGATGGCC CGGCTCCAAC CCCAAGGACA AGCGCTTTTT CGCGGAGATG
AAGCAGTACC AGCTGAGCAC CGCCAAACTG GCCGCCTTCG GCTCCACCCA CGCCGCCAAG
GGCACGGCTG AGAGCGACGC CAACCTGCTG GCCCTCATCG AGTCCGAAGC GCCGGTGCTG
ACCATTTTCG GCAAGACCTG GGACATACAC GTCACCGACG CGCTCAAGAT CACGCTGGAG
CGCAACCTCG AACTCATCCG CGACTCCCTG GCCTTTTTGC GCCCCCATGC CGATGAGCTT
TTCTACGATG CTGAACATTT CTTCGACGGC TACAAGAAGA ACGCCGACTA CGCCATTTCC
TGCCTGCAGA TGGCCATGGA CGCCGGGGCG GACCTGCTGG TGCTCTGCGA CACCAACGGC
GGCAGCCTGC CGGAGGAAAT CGCCGCCATC ATGGACACCG TGCGCGAGCG TCTGCCCAAG
GCGCGCCTTG GCATCCACGT GCACAACGAC TGCGAGCTGG CCGTGGCCAA TTCCCTGGCC
GCCGTGCGCC ATGGGGCGGT CCAGGTGCAG GGCACCATCA ACGGCTACGG CGAGCGCTGC
GGCAACGCCA ACCTCTGCTC CATCATCGGA AATCTGGAAC TCAAGATGGG CTATTCCTGC
CTACCCCAGG GGCATCTGGA GCGCCTGACC GACACCTCGG CCTTTGTGGC CGAAGTGGCC
AACCTGCGCT GTTTCAAGCG CCAGCCCTAC ACGGGGCAAT CCGCCTTCAC GCACAAGGGC
GGGGTGCACG TCGCGGCCGT GCGCCGCAAC CCGCGCACCT ACGAGCACAT CGAACCCGAG
CTGGTCGGTA ACAAGCAGCG CATCATCCTT TCGGACCTGG CCGGGCAGTC GAACATTCTT
TTCAAGGCCA AGCAGTACGG GTTCGAGCTG GACAAGGGCG ATCCCTTTGT TCTTGAACTC
CTGACGGAGC TCAAGAACCG CGAGGACCAG GGCTACGAAT ACTCCGCCGC CGAAGCGTCC
TACGAACTGC TGGTCAACAG GGTGTTGGGC CGGGCGCGCA ACTACTTTAG ACTGATGAGC
TTCCGCATCC TGGACTCGGT CTTCACCGAG GGCGTCGAAC CCTTCACCGA GGCCACGGTC
ATGCTGCGCG TGGGCGGGAT GGTCGAGCAC ACGGCGGCCA CGGGCAAGGG ACCGGTCAAC
GCCATGGACT GCGCCCTGCG CAAGGGGCTG GAACGGTTCT ACCCGAACCT GAACGAAATG
CGTCTGATGG ACTTCAAGGT GCGGGTCCTG GCCGTGGCGA ACAAGGAAGA GGGCCACAGC
GGAACGGCCT CGGTGGTGCG GGTGCTGATC GAATCCGGGG ATCAGAAGAG CCGCTGGACC
ACGGTGGGCG TGTCCTACAA CATCATCGAG GCCAGCCGCC AGGCGCTGGA GGACTCCATC
AACTACAAGC TCTTCAAGGA CGACCAGAAA AAGCTGACCC AGGCCATCCG CGAAATTTAA
|
|---|
| Protein sequence | MNTIQIYDTT LRDGTQSEEL NLSTEDKLRI ATRLDQLGVA YIEGGWPGSN PKDKRFFAEM
KQYQLSTAKL AAFGSTHAAK GTAESDANLL ALIESEAPVL TIFGKTWDIH VTDALKITLE
RNLELIRDSL AFLRPHADEL FYDAEHFFDG YKKNADYAIS CLQMAMDAGA DLLVLCDTNG
GSLPEEIAAI MDTVRERLPK ARLGIHVHND CELAVANSLA AVRHGAVQVQ GTINGYGERC
GNANLCSIIG NLELKMGYSC LPQGHLERLT DTSAFVAEVA NLRCFKRQPY TGQSAFTHKG
GVHVAAVRRN PRTYEHIEPE LVGNKQRIIL SDLAGQSNIL FKAKQYGFEL DKGDPFVLEL
LTELKNREDQ GYEYSAAEAS YELLVNRVLG RARNYFRLMS FRILDSVFTE GVEPFTEATV
MLRVGGMVEH TAATGKGPVN AMDCALRKGL ERFYPNLNEM RLMDFKVRVL AVANKEEGHS
GTASVVRVLI ESGDQKSRWT TVGVSYNIIE ASRQALEDSI NYKLFKDDQK KLTQAIREI
|
|---|
| |