| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_2327 |
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| Symbol | |
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| ID | 8378004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | + |
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| Start bp | 2676460 |
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| End bp | 2679936 |
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| Gene Length | 3477 bp |
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| Protein Length | 1158 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645001550 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003158824 |
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| Protein GI | 256830096 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCATGC ACCGCCTCTT GCAACGCCAG CTCAAGCGGG CCCGGATCAC TCCTGGCGAG
CTACCCTCCG ACTTCGGACC TTTCATGAAC CTCGTCGATG ACGCCTACCG CCAATTCGAT
GAAGAAAAGG AGGTCCTGGA AAGGGCTCTG GAAATCAGCT CCGCCGAGCT TGTGCGTCGC
AACGAAGTCA TGCGCGCCGT ATTCATGGCC CTGCCGGACG TATTTCTCTG GATCACCCGC
GACGGCCTGA TCACGGATTG CCGTGGCGGT CTGCAAGCCC TCTTCGGGGT TGAACCCCTC
AGCCTTTTAA AGAAGAACCT GCGCGAAATC CCGGATATCG CCGAGCCCCA GGCTTTCTCC
CTGGCCATGC GCATGTTGAC CGAAACATCA TTCTTCCAGG CCGAGTACTC CATCCACTCC
ACAGACCGGA CCCGGCACTA CGAAGCCCGC TTCGCCAACC TCGAGGACAA CCTGATTCTG
GTCCTGATCC GGGACATTTC CGACCGCGCC ATGGCCGAGG AGGCTCTCCT TGGAGTGCAG
CAACACCTGG ATCACATCAT CGAATTTCTG CCCGACGCCA CGTTGGTGGT CGACAACGAA
CACCGGGTCA TTGCCTGGAA CAGAGCCATG GAAGGCATGA CCGGAGTTCC CAAAGAGGAA
ATCCTCGGCA AATCGGGCTA TGAGTACGGC ACGCCCTTTT ACGGACATCC GCGTCCTATT
CTCCTGGATT TCATCGGCAA GGACCCAAGC CACGACTATC CCATGTACGA GCCCACCCAG
AGCAACCTCG AAGGACTGGC CACGGAGATT TTTGTTCCGC TCCTTAGCGG CGGGCGGGGA
GCCTACGTCT GGGCCAAGGC CTCCGCGCTG TACGACAAGG ACGGCAACAT CGCCGGAGCC
ATCCAGACCA TCCGGGACAT CACCGACAAG AAGCGCGTCG AGATCGGCAC CCGGGTCCTC
TATCTGGTCT CCACCGCGGC CAGCACCCCC CTCGCGGACA GGGATCTGCT CGCCAAAGTC
TTCGACATCC TGGCCGAACA CCTTGACGTC CAGATCATGT TCGTCTCTCT GCTTGGCGAA
GAAGGCTCAA ACCTCACCTT CCCATTTTTC AGCAGGCAAG AACTGGCCAG ACACGAGACC
TTGAAGCATA TTTCCATGCT CTCCGCCGAG GCATGGGTGT CCTTGTCCCC ACAAATCACG
GACACCAGGC CGGAGGGCCT GGACAACGAC AAGGCGCAGC CCGCGTTGTG GTTTGCCTCT
CCCCTGCGCT ACGGGGAACA ACTGCTGGGA TCCGTGGTCA TCGCCCTGCC CGAGAACAAT
CACTTTGTCT GCGAAAAGGA CACACACGTG TTGGCTTCGG TGGCAGACCA TCTGGCGCTG
GCCATTTCAC GCAACGCCAC GGAAAAAGCG CTGAGCCAAA GCGAGAAAAA GCACCGCGCC
ATCTTCGAAA ACGCGACCGA AGGCATCTTC CAGATCTCGC TCGATCACGA TCTCTTGAGC
GCCAACCCGG CCATGGCCAG CATTTTCGGG TACGACAGTT TGGACAGTCT GATGGCCGGG
GCCAAGGGAT TCCTGCAACG CGCCATCTCC TCGTCCGACC GGGTCCGGTT ATTGAGTCAG
GCCCTGAAGC TCGGCACCGC TCAGAACTTC GAACTCGACG CGTTCATGGC AGGCGGAAAG
AAAACCTGGA TCTCGATCAA CATGCGCACC GTAAAGCGAT CCGACGGTTC CATCAGCCAC
CTCGAAGGCT CCGTGCGCGA TGTGTCCAAA CGCAAGAAGG CCGAACGCAG GCTCGCCATC
CAGAAAGGCC TTTTCCAGCA GCTCTTCGAC AATTCCCCGC AAGGCATCCT GCTGCTGGGC
AAGGACGGGG CGCCCATGGA CATCAACCCG AGCTTCACCA GCCTTTTCGG ATACGCCAGA
AGCGACCTCC ATGCCCTTTT TGAGATGCTG TTGCACCCGG ACAGCCTCGA CGAAAGCTAC
GCCTTCGTCT CCACGGTGCT GAGCGGGACC TCGGTCAGCA CGGAAACCCA GCGCAGGACC
AAGGACGGAC GAATCATTCC CGTCTCCATG CTCGGCTATC CCTATGTGCT GGACGGCACG
ATCTCCGGGG CATTCTTCAT CTTCAGCGAC ATTTCCGAGC GCAAGAATTA CGAAGCGCAG
CTGACCAGGC AGGCCCTGCG CGACAACCTG ACGGGGCTGC CCAACAGAGT GCTGTTCATG
GATCGGCTGA ACCGGGCCAT GACCCGGCAG CAGCGCAACG GCGAATACCG TTTCGCCGTG
CTCATGATCG ACCTGGACAG CTTCAAGCGG GTCAACGACA CCCTCGGCCA TCAGGCCGGG
GATCACCTGC TGCAGGAAGT GGCCGCGCGC CTGACCCATT GCCTGCGAAC CATGGACACG
GTGGCCCGCA TGGGCGGAGA CGAATTCGCC GTACTGCTCG AAGACTTCCA GAACAATCAT
GAAGCCATCG GCATCACCCG CCGGCTTCTG GACACCATCC GCCAGCCTCT CAAGATTCAG
GACCGGGACG TGCTGGTCAG CGCGTCTGTC GGCGTGGTGC TGCAGACCGC GCGCTACACC
TCGCCCAACG ACCTGTTGCG AGACGCCGAC ATCAGCATGT ACCGCTCCAA GGAGCTGGGC
AAAAACCAGT TCAAGGTCTT CAGCAAAAGC ATGTACGAAC AGGTCGTGCA GACCGTGCAG
CTTGAAAACG ACCTGCGCCA GGCCCTGGTC GAAGACGAAT TCGAACTCTT TTTTCAGCCC
ATCTATGCCT TAAGCGGACA GAAGCTCCGG GGATTTGAGG CGCTCATCCG CTGGAACCAC
CCTCAGCGCG GCCACCTCCC TCCCGGAGAA TTCATCCCCG TGGCCGAGGA AACCGGGCTG
GTCACCGAGA TCGGCAAATG GGTCATGCGC CGCGGATGCC GGGTTCTGGC CGGATGGCAA
TCGCAATTCC CCGGACTTGA CATCAGCCTG TCCCTGAACC TTTCGCCCAA AGATCTGCTG
CAGGCCTCGC TCGTCCCCGT GCTGACGGAG TTGCTGCATG AAACCGGCCT CGACGCGCGG
CACCTCAAAC TCGAGATCAC CGAAACCGCG GTCATGGACA ATCCCGAGCA AGCCACATCC
AGGCTGGAGC GACTGCAGAA AATGGGCTTC CAGATCGCCA TGGACGATTT CGGCACCGGG
TATTCGTCCC TGTCCTACCT GCAGCGCCTG CCCATCGACA TCCTCAAGAT CGACCGCTCT
TTCGTGCAGA CCATGCTCGA AAACCCCAAC AACCTTGAAA TCATCAAGGC CATCATCGGG
CTGGGAAAAA TCCTGGACCT GCGCATCGTG GCCGAGGGCG TGGAAACCCG GCAGCAGCTT
GAAACCTTGC AGGAGCTCGG GTGCGACCTG GCCCAGGGAT TTCTCCTCGG CCGGCCCATG
TCCAAAGAAC AGACCGAAAG CCTGATATCC GCATGCAGCG AGAACCCGTC GGCATGA
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| Protein sequence | MSMHRLLQRQ LKRARITPGE LPSDFGPFMN LVDDAYRQFD EEKEVLERAL EISSAELVRR
NEVMRAVFMA LPDVFLWITR DGLITDCRGG LQALFGVEPL SLLKKNLREI PDIAEPQAFS
LAMRMLTETS FFQAEYSIHS TDRTRHYEAR FANLEDNLIL VLIRDISDRA MAEEALLGVQ
QHLDHIIEFL PDATLVVDNE HRVIAWNRAM EGMTGVPKEE ILGKSGYEYG TPFYGHPRPI
LLDFIGKDPS HDYPMYEPTQ SNLEGLATEI FVPLLSGGRG AYVWAKASAL YDKDGNIAGA
IQTIRDITDK KRVEIGTRVL YLVSTAASTP LADRDLLAKV FDILAEHLDV QIMFVSLLGE
EGSNLTFPFF SRQELARHET LKHISMLSAE AWVSLSPQIT DTRPEGLDND KAQPALWFAS
PLRYGEQLLG SVVIALPENN HFVCEKDTHV LASVADHLAL AISRNATEKA LSQSEKKHRA
IFENATEGIF QISLDHDLLS ANPAMASIFG YDSLDSLMAG AKGFLQRAIS SSDRVRLLSQ
ALKLGTAQNF ELDAFMAGGK KTWISINMRT VKRSDGSISH LEGSVRDVSK RKKAERRLAI
QKGLFQQLFD NSPQGILLLG KDGAPMDINP SFTSLFGYAR SDLHALFEML LHPDSLDESY
AFVSTVLSGT SVSTETQRRT KDGRIIPVSM LGYPYVLDGT ISGAFFIFSD ISERKNYEAQ
LTRQALRDNL TGLPNRVLFM DRLNRAMTRQ QRNGEYRFAV LMIDLDSFKR VNDTLGHQAG
DHLLQEVAAR LTHCLRTMDT VARMGGDEFA VLLEDFQNNH EAIGITRRLL DTIRQPLKIQ
DRDVLVSASV GVVLQTARYT SPNDLLRDAD ISMYRSKELG KNQFKVFSKS MYEQVVQTVQ
LENDLRQALV EDEFELFFQP IYALSGQKLR GFEALIRWNH PQRGHLPPGE FIPVAEETGL
VTEIGKWVMR RGCRVLAGWQ SQFPGLDISL SLNLSPKDLL QASLVPVLTE LLHETGLDAR
HLKLEITETA VMDNPEQATS RLERLQKMGF QIAMDDFGTG YSSLSYLQRL PIDILKIDRS
FVQTMLENPN NLEIIKAIIG LGKILDLRIV AEGVETRQQL ETLQELGCDL AQGFLLGRPM
SKEQTESLIS ACSENPSA
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