Gene Dbac_2324 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_2324 
Symbol 
ID8378001 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp2671893 
End bp2675162 
Gene Length3270 bp 
Protein Length1089 aa 
Translation table11 
GC content60% 
IMG OID645001547 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003158821 
Protein GI256830093 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCTTCA TCCTTGCCCT GCTCCTGCTG CTGACCGTCG GCAGCCAATG TCTGGCAAAC 
CCTCCGCTGG ACCTCAGTCC CGAGGAGCGT GCCTGGCTGG CCGAGCACAA GGATTCCCTG
ACCCTTTCCT TCGACCGCTC GTTCCCCCCC ATCGAATTCG AAAAACCAGA CGGCTCGTTC
ACCGGTCTGA GCGCGGACCT CGTCGCCCGG ATCGAAGAGC GCCTCGGCAT CACCTTCCGT
AAGCAGGGCA TACCCTGGAC CCAGGCCCTT GAAGGCCTGC AAGACGGAAC CACGGCGCTT
GCCCCGGCCA TCGTCAACAA CGCGGAACGC TCCGAATACA CGCTTTTCAC CCAGCCCTTT
GTCCGCATTC CCCTCGTCAT CGTCACCTCC CGCCATATGA AAGGCCCTCT GTCCCTGGAC
GATCTCGCCG GGATGCGCGT GGCAGTGGTT CGCGGCTACG CCTCGGCGAC GCTGGTCAAG
AAGGCCGGCC AAGGCCGGTT CACCGTGGTG GAATTGGAGA CCATTCGCGA AGGGCTGCGC
GACGTCTCCT TCGGAGTGGT CGACGCCTTT GTGGAGAGCC TGGCCGTGGC CGCATGGCAC
ATCGGGCAGG AAAAGCTGCC CAACCTGCGC GTCGCCGGAG ATCTGGACGT GACCCAGGAC
CTGTCCATCG GCGTCAGCAA GCATTATCCG CTTCTGGCCA GCGCCGTGGC CAAGGCACTG
ACGTCCATCC CCGAGCCTAG CATAAATAAT ATCACTGATC GCTGGATTCA CTTACCGACC
TCTTTTCTGG GCAAGCATAC CCTTGAGGCC TTGAGGCTCG CGGCGCTTTT GACGGCCGTC
GTCTTCCTTG TCCTGGCCGG AATCGCCTGG GCTCTGAGCC GCACGCTGCG CAAAAAGATC
AACGATCTCA AACGCACCGA GTCCGCTCTG ACGGAACAGG TCGACCGCTT CCGCCTGGCC
CTGGAAACCA CCCAGGCCGG ATTCTGGGAA CACTACCCGG CAGAAGGCCG GGAAGTGCAC
AGCCCGGAAT GGTACGCCAT GCTTGGATAC ACTCCCCAGG CCGTTACGGG CGGCGTGGAG
GACTGGACCG CCCTGATCCA TCCCGAGGAG CGGGAAAAAG CGCTGGCCAG CTTTTCCGCC
TACATCAGCG AAGGCGGCAA GGGCATGTAT GAAGCCCAGT ACCGCCTACG CGCCAAGGAC
GGTTCCTGGC GCTGGATCAT GGGCAAAGGC CGCGCCGTTT CCTGGGACGA CGAAGGCCGG
CCGACGCGCA TCATCGGCCT CAATCTGGAC ATTCAGAAAA GCAGGCAAGA TCAGCTCGAA
ATGCAGCGCA CCCAGACCCT CAACAAGGCG CTGCTCGAAC AGACCACGCA ATTCATCGGC
CTGCTCGACC TGCAGGGGAA TCTCCTCGTC GCCAACCGCA CGAGCATGGA ATGGATCAAA
GCAAAGCCGG AGGAAGTCCT GGGGAAACCA TTCTGGGACG GACCCTGGTG GCCGGACAAA
ACCAAAGCCG AGTTTCTTTT GCTGCAACTC ATCGATCAGG TCAGAGAGGG CAAAACCGTT
CGGCGCGAGA TCGTGCACGC CGATTCCGAA GGCAGGGAAT CGTTCTTCGA TTTCACGATG
TCTCCGTTCC GCAATGAAAC AGGTCAGGTC GTCAACTTCA TCGTTGAAGG CCGCGACATC
TCCATGCTCA AGAAAAAACA GCAGGAGATC ATGGAAAGCG AGAAGCGGTT CCGCACGATT
TTTGAAAACG CGCCTTACTC CATGGTCATC ACCCGCCTTT CGGACGGCAA GTACATGGAC
GCCAACACTG CCTTTCTGGA CCGGATGAAC ATCAGCCGCG AGAATCTTCT CACGCTTTCT
CCCAAAGACG TCGGAACCTT CGGCCAAGCG CACCAGCAGG AAATATTACT GCGCCTCAAG
GCCAGCCGCA ACATCCACAA CATGGAAACC CAGGTGCAAA GGCCCGACGG CACGACCGGA
CACATCCTGT ATTCGGGCGG GCTCATCACC CTTGACGGCG AGGCCTGCAT CCTGTCCATG
ACCGTGGACA TCACCGAACT CAAACAGGCC CAGGAAGAAC TGCGCCGTTC CAAGGAGATG
TTCGCCCGTC TTTTCCAACT CTCTCCGGAC ATCATCACCC TGGCTAGGCA GGAAGACGGT
GTCCTTCTGG AGGTCAACGA AACCTTCTCG CGCACCACCG GCTACTCCCG GGACGAAGCG
CTGGGTAAAA GCACGCTGGA TCTGACCATC TTTGCCGCGC CCGAAAGAAG GACCGCGTTC
GTGCAGGCCC TGCTGCGCGA CGGACAGGTC GACAACTTTG AATTCGAAAT GCGCCACCGT
GACGGACACA CCCTGCAGTG CTCGACCTCG GCCAGGCTGA TGAACATCGA CGATACGCCC
TGCATTCTGG CCATCACCCG CGACATAACG CATCTTCGGG CCTTGCAGGA CAGCATGATC
CAGTCCGAAA AAATGCTCTC CCTCGGGGGC ATCGCCGCCG GCATCGCCCA CGAGATCAAC
AATCCGCTCG GCATCGTGCT GCAGGCGGCC CAGACCATCA CCCTGCGCAC CAGAGCCGAC
TTCCCCAAGA ACATTGAAGC GGCCGCGAAG GTCGGCGCGG ATCTGGGCCA GGTGGACCGC
TACCTCAAAG AGCGCAAAGT CGATGTCTTC ATTCGCGATA TCCAGGGCGC AGCGGTCCGG
GCGGCGGAGA TCATCCGCCA CATGCTCGAT TTCAGCAGGC GCAGCGAGTC GAGGCACTCG
GTCTGCGACA TAAGGGTCAT CCTTGAAAAC TCCCTGCGCC TCGCCTCCAG CGACTACGAC
CTCAAGAAAA ACTACGATTT CAAATCCATC AGAATCGAGA AGGACGTAGA GGACAACCTG
CCCTGTCTGC TGTGCACGGA AACGGAAATC GAGCAGGTCC TTCTCAACCT GCTGCGCAAC
GCGGCCCAGG CCATGGCTGA AGCCGAACCG CCCCTTCCCG ATCCCTGCAT CGGCATCCGG
ATCAGAAAGA TGGAAACGGG GCTGCGCATC GACATCAGGG ACAACGGACC CGGCATCTCG
GCGGAGAACC GCAAACGCAT CTTCGAACCC TTCTTCACCA CCAAGACCGC CGGGGCGGGC
ACCGGCCTTG GGCTGTCCGT ATCCTACTTC ATCATCACCA AGGGACACGG CGGAGCCATG
TACGTCACCG CCCCTGCCGA GGGCGGGACA GTTTTCAGCA TCGAACTGCC CGGAACAACG
GAATCCGTAA AACATGAAGC CCATGCCTAG
 
Protein sequence
MRFILALLLL LTVGSQCLAN PPLDLSPEER AWLAEHKDSL TLSFDRSFPP IEFEKPDGSF 
TGLSADLVAR IEERLGITFR KQGIPWTQAL EGLQDGTTAL APAIVNNAER SEYTLFTQPF
VRIPLVIVTS RHMKGPLSLD DLAGMRVAVV RGYASATLVK KAGQGRFTVV ELETIREGLR
DVSFGVVDAF VESLAVAAWH IGQEKLPNLR VAGDLDVTQD LSIGVSKHYP LLASAVAKAL
TSIPEPSINN ITDRWIHLPT SFLGKHTLEA LRLAALLTAV VFLVLAGIAW ALSRTLRKKI
NDLKRTESAL TEQVDRFRLA LETTQAGFWE HYPAEGREVH SPEWYAMLGY TPQAVTGGVE
DWTALIHPEE REKALASFSA YISEGGKGMY EAQYRLRAKD GSWRWIMGKG RAVSWDDEGR
PTRIIGLNLD IQKSRQDQLE MQRTQTLNKA LLEQTTQFIG LLDLQGNLLV ANRTSMEWIK
AKPEEVLGKP FWDGPWWPDK TKAEFLLLQL IDQVREGKTV RREIVHADSE GRESFFDFTM
SPFRNETGQV VNFIVEGRDI SMLKKKQQEI MESEKRFRTI FENAPYSMVI TRLSDGKYMD
ANTAFLDRMN ISRENLLTLS PKDVGTFGQA HQQEILLRLK ASRNIHNMET QVQRPDGTTG
HILYSGGLIT LDGEACILSM TVDITELKQA QEELRRSKEM FARLFQLSPD IITLARQEDG
VLLEVNETFS RTTGYSRDEA LGKSTLDLTI FAAPERRTAF VQALLRDGQV DNFEFEMRHR
DGHTLQCSTS ARLMNIDDTP CILAITRDIT HLRALQDSMI QSEKMLSLGG IAAGIAHEIN
NPLGIVLQAA QTITLRTRAD FPKNIEAAAK VGADLGQVDR YLKERKVDVF IRDIQGAAVR
AAEIIRHMLD FSRRSESRHS VCDIRVILEN SLRLASSDYD LKKNYDFKSI RIEKDVEDNL
PCLLCTETEI EQVLLNLLRN AAQAMAEAEP PLPDPCIGIR IRKMETGLRI DIRDNGPGIS
AENRKRIFEP FFTTKTAGAG TGLGLSVSYF IITKGHGGAM YVTAPAEGGT VFSIELPGTT
ESVKHEAHA