Gene Dbac_1888 details

Gene Information

• Locus tag: Dbac_1888
• ID: 8377560
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfomicrobium baculatum DSM 4028
• Kingdom: Bacteria
• Replicon accession: NC_013173
• Strand: +
• Start bp: 2180080
• End bp: 2181900
• Gene Length: 1821 bp
• Protein Length: 606 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 645001116
• Product: choline/carnitine/betaine transporter
• Protein accession: YP_003158395
• Protein GI: 256829667
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1292] Choline-glycine betaine transporter
• TIGRFAM ID: [TIGR00842] choline/carnitine/betaine transport

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.541906
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGACAAAG GTAAAAAAAT AAAAAAAAAG AGACGCGAGC CAACCTATGA GCGCAAAGCC 
ATTGAAATGG CGCGCGAGCA CTACGAAACG CAAAAGCAGA AAGCCATCCA CGAACGACGG 
GTTTTTCGCG GTCTTCAGAT CATCCCGACA AAAGCCTATT ACGACGACTC CCTCGGTCAC 
AAACCCGGAG AAAACAACTG GGTCGGATAC GGATTCGATG TTCACCCCTA CGTCTTTTTC 
GGCGCGGGAA CTCTGCTTTT GACATTCATC ATCGTGACGA TAATGTTCAA AGAGCAGTCG 
GCAGTCTTTT TTCAAAGCGT ACTGGATGGA ATCGGCAATA CCTTTGGCTG GTTTTACATT 
CTTTCGGCCA ACTTCTTTGT CATCACCATG ATCCTGATCG CATCCAGCGA CTACGGAAAA 
ATACGAATAG GCGGCCCGGA CGCCTTGCCG GAATTCTCGA CATTCAGCTG GTATTCCATG 
CTCATCAGCG CCGGCATGGG TATTGGCCTC ATGTTCTGGA GCGTAGGCGA ACCCATCTTT 
CATTACATGT CGCCCTCCCC AATGTTCGAT GTTCCCGCCA GCACCCCGCA GTCAGCGCAG 
GTTGCGCTGG GGCTCACGTA TTACCATTGG GGAATTCATC CCTGGGGCAT CTATGCGCTG 
GTCGGACTCT CGCTGGCTTT TTTCGCCTAC AACCGGGGAC TCCCCCTCAC CATCCGTTCC 
ATCTTTTACC CACTTCTGGG TGAAAAAATA TATGGATTCT GGGGCAATAT CATCGACATT 
CTCTCCGTGC TGGCCACGCT TTTCGGTCTC GCCACGTCTC TTGGCCTGGG CGTAAAGCAG 
GTCGCGACGG GACTGACGTA TCTGTTTGGC TCGCCCAACA CAGTGGAATT CGCCGTGATC 
CTGATCGCAG CGATCACGTT CCTGGCTGTC CTTTCAGTGA CTGCCGGTCT GGATAAAGGA 
GTCAAACTGC TGAGTATCGG CAACATGTAT CTGGCTGGTG CCTTCATGAT CTTTTTGTGC 
GCGGTGGGTC CGACGGTCTA TATTCTCAAG GCTTTTACGC AGAATATCGG CTTTTACATC 
CAGAACCTGC CACAACTCAG CTTCTGGGTG GAAACCTATT ACGGCGCGGA AGGAAGCAAC 
TGGCAAAATC CCTGGACCAT ATTTTATTGG GGCTGGTGGA TCTCGTGGTC ACCCTTTGTG 
GGCATGTTCA TAGCCAGAAT CTCAAAAGGA AGGACTGTAC GGGAGTTCAT TCTCGGGGTG 
ATGATATTCC CGACGATACT TTCATTCCTG TGGATGTCTT CTTTCGGCGG ATCAGCCCTG 
TGGTTGCAGA TTGCCGGCAA GGTCGACATC GCGAGTGCGG TCAGTAAGGA TGTTTCAACA 
GCACTCTTTG TGATGCTTGA AAATTTTCCG TTGTCGCAGA TCACATCATT TATCGGCATA 
ACTCTTGTGA TCGTCTTTTT TGTAACCTCA TCCGATTCCG GATCATTAGT AGTGGACCAT 
CTCACCTCAG GCGGAAAACT TGACTCTCCA ATCCCGCAGC GCATTTTCTG GGCCGTCATG 
GAAGGCGTTT GCGCCGCTGC TCTGCTCATG GGAGGCGGAT TGGTGGCGCT GCAAAGTGCA 
TCCATCGCCA CGGGGTTGCC GTTTACCCTT GTATTGCTGA TCATGTGCTA CAGCTTGTAC 
AAGGGGTTGC AGGAAGAGGA CTACCACGCG CGAATCATAG AAAAGATCAC CCCGGCCACG 
CAAACCATCC AGATCCCTCT GGGAGAAGGC GACTCCACCA CCAAAATCGC TCCCCCGGCA 
ACATCAAGTC AGGGCAGGTA A 

 

Protein sequence

MDKGKKIKKK RREPTYERKA IEMAREHYET QKQKAIHERR VFRGLQIIPT KAYYDDSLGH 
KPGENNWVGY GFDVHPYVFF GAGTLLLTFI IVTIMFKEQS AVFFQSVLDG IGNTFGWFYI 
LSANFFVITM ILIASSDYGK IRIGGPDALP EFSTFSWYSM LISAGMGIGL MFWSVGEPIF 
HYMSPSPMFD VPASTPQSAQ VALGLTYYHW GIHPWGIYAL VGLSLAFFAY NRGLPLTIRS 
IFYPLLGEKI YGFWGNIIDI LSVLATLFGL ATSLGLGVKQ VATGLTYLFG SPNTVEFAVI 
LIAAITFLAV LSVTAGLDKG VKLLSIGNMY LAGAFMIFLC AVGPTVYILK AFTQNIGFYI 
QNLPQLSFWV ETYYGAEGSN WQNPWTIFYW GWWISWSPFV GMFIARISKG RTVREFILGV 
MIFPTILSFL WMSSFGGSAL WLQIAGKVDI ASAVSKDVST ALFVMLENFP LSQITSFIGI 
TLVIVFFVTS SDSGSLVVDH LTSGGKLDSP IPQRIFWAVM EGVCAAALLM GGGLVALQSA 
SIATGLPFTL VLLIMCYSLY KGLQEEDYHA RIIEKITPAT QTIQIPLGEG DSTTKIAPPA 
TSSQGR