Gene Dbac_1859 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_1859 
Symbol 
ID8377531 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp2118970 
End bp2120040 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content55% 
IMG OID645001087 
ProductRNA polymerase, sigma 32 subunit, RpoH 
Protein accessionYP_003158366 
Protein GI256829638 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.539066 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCAAGA ACCACCTCCA GTCACGCACC ATCATGAATC CCAATCAACG ACCCGAAGAC 
AATGCTCTGG ATGAAGAGCT CGAAACACCC TTATCAGAGG ACACCGAAGA ATTCGATGAC
GATGTCGTCG ACGATTCCGA CACGATCGAC ACTGTCGATA TCGATGAAAT CGCCCCGCTG
GTCCTGGCCA CAGTCCCCCG ACGCGAAGTC GCGACCCTGG ACCCGCTGCA TATCTATCTT
CAGGAAATCA AAAAATTCAA ACCCCTGGAA CAGGACGAAG AATTCGATCT GGCCAGGCGC
TACCGGGACG AAAAGGAAGA GCAGGCGGCC TTTATCCTCA TCACCTCCAA TCTGCGGCTG
GTGGTCAAGA TCGCCATGGA TTTCCAGCGG CGCTGGATGA AGAACGTGCT CGACCTGATT
CAGGAAGGCA ACGTGGGCCT CATGAAGGCG GTCCAGAAGT TCGACCCGGA CAAGGGCATC
AAGTTTTCCT ATTATGCCTC GTTCTGGATC AAAGCCTATA TCCTGAAATT CATCATGGAC
AACTGGCGCA TGGTCAAGAT CGGAACCACC CAGGCCCAGC GCAAGCTGTT CTACAACCTG
GGCAAGGAGC GCCAGCGCCT GCAGGCGCAA GGATTTGACC CGACGACATC CACCCTTTCC
AAGAATCTGC AGGTCTCCGA AGCCGACATC GTGGAAATGG GTCAGCGCCT GGGACAACAC
GATGTGTCCC TGGACATGAA GATCGGGGAC GACTCCAGCT TCACGCCCAT GGATTTCATT
CCGGCTCTTG AGGCCGGGAT CGAGGAACAG ATGGCCGCCG ACGAGATCAG CGTGCTCATC
CACGACAATA TTGACGCCAT ACGGGACGGC CTGAACGAAA AGGAACTCGA CATCCTGGAG
CAGCGTCTTC TGGCCGACTC GCCTATCACC CTGCGCGAAA TCGGTGACAA GTACGGGATC
ACCCGGGAAC GGGTACGCCA GATCGAAGCC CGTCTGCTGC AAAAGATCAA GGCCCAGATG
TCGAGCACCA TCCAAGATTT CTCCTCAGAA TGGATTGAAC ATGAAGAATG A
 
Protein sequence
MPKNHLQSRT IMNPNQRPED NALDEELETP LSEDTEEFDD DVVDDSDTID TVDIDEIAPL 
VLATVPRREV ATLDPLHIYL QEIKKFKPLE QDEEFDLARR YRDEKEEQAA FILITSNLRL
VVKIAMDFQR RWMKNVLDLI QEGNVGLMKA VQKFDPDKGI KFSYYASFWI KAYILKFIMD
NWRMVKIGTT QAQRKLFYNL GKERQRLQAQ GFDPTTSTLS KNLQVSEADI VEMGQRLGQH
DVSLDMKIGD DSSFTPMDFI PALEAGIEEQ MAADEISVLI HDNIDAIRDG LNEKELDILE
QRLLADSPIT LREIGDKYGI TRERVRQIEA RLLQKIKAQM SSTIQDFSSE WIEHEE