Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dbac_1812 |
Symbol | |
ID | 8377484 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfomicrobium baculatum DSM 4028 |
Kingdom | Bacteria |
Replicon accession | NC_013173 |
Strand | - |
Start bp | 2066387 |
End bp | 2067100 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645001040 |
Product | Rhomboid family protein |
Protein accession | YP_003158319 |
Protein GI | 256829591 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00264176 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTCCCC TGCGCGACAA CATCCCCTCC CGGCATCGGT CCTACATGAT GTGGACGCTG CTGGCCCTGA ACATCGCCTT TTTTCTGGCT GGCCTGGGCC TGAGCAATGC CCAGGAATTC AGGCTCTTTC ATTTGTTCGG CGTGGTCCCG GCACGCTATT TCGACCCGCA GTGGGCCATA TTTCAGGGAT ATCCCGAAGG GTTGCTGTTG CCGCTTGGAA CACACATGTT CCTGCATTCC GGCTGGCTGC ATCTCATCGT CAACATGTGG ACCCTCTGGA TTTTCGGGGA CAACGTGGAG GACGTGATGG GGCCCTTCAA GTTCCTGGTC TTCTACCTGC TGTGCGGTCT TGGCGCGCTC GCGGTGCACA TGCTCACCAA TTCCTCTTCC ACCATGCCCG TGGTCGGGGC TTCCGGGGCC ATCGCCGGGG TCATGGGCGC CTATTTCTTT CTGTATCCGC ACGCCAAGGT GGTTACTTTC CTGCCTATCC TGATCATTCC CTTCATCTTC GAGCTGCCGG CCGTGTTCTA TCTGGGGGCC TGGTTCCTGA CGCAGGTCCT TTCCGGGATG CTGGCACCGG CGGGCGGCGG TGGGGTGGCC TGGTGGGCGC ACATCGGCGG GTTCGTGGTC GGCATGCTGC TGCTGCGTTT TTTCCGGGAT GATTCCCGCT GCTATTATTG TTACCGTTCC GAAACCTGGA AGGAGTGGAA GTAG
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Protein sequence | MFPLRDNIPS RHRSYMMWTL LALNIAFFLA GLGLSNAQEF RLFHLFGVVP ARYFDPQWAI FQGYPEGLLL PLGTHMFLHS GWLHLIVNMW TLWIFGDNVE DVMGPFKFLV FYLLCGLGAL AVHMLTNSSS TMPVVGASGA IAGVMGAYFF LYPHAKVVTF LPILIIPFIF ELPAVFYLGA WFLTQVLSGM LAPAGGGGVA WWAHIGGFVV GMLLLRFFRD DSRCYYCYRS ETWKEWK
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