| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1642 |
|---|
| Symbol | |
|---|
| ID | 8377314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | - |
|---|
| Start bp | 1861269 |
|---|
| End bp | 1864664 |
|---|
| Gene Length | 3396 bp |
|---|
| Protein Length | 1131 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645000871 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_003158150 |
|---|
| Protein GI | 256829422 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0330659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACGTT TGCGATGGAC AATTCTGGCT GCGGTATTCT GGATCATGCT GCTGGCCCTT
TCCCTCGGGT GGAACTGGCA ACACCTCGAA CGGTCGTTGA TCGGGCTGGC CGAATCCGAG
GCCAATGCCG CATTTCACAA GGACGTGACC TACAGGTTGT GGGCCGCCAT GCAGGGAGGG
GTGTATGTGC CGCTATCGGA GAACACCCCG CCCAATCCCT ATCTCAAGCA TATCCCGCAA
CGCGACGTTG AAACCACCGG CGGAGAAAAA CTGACCCTGG TCAATCCGGC CTACATGACG
CGTCAGGTGC ATGAACTGGG GAAGGAGAAG TACGGTCTGC GCGGGCACAT CACAAGCCTT
GAGCCCTTGC GCCCCGAGAA CGCGCCCGAC GAGTGGGAAA CAAAGGTCCT GCGGTCGTTC
GTCGAGGGAA GCCTCAAGGA AACCACCCGG CAGAGCTTCG ACGGACAGCC GTACTTCAGG
CTGATGCGTC CGCTTTTCGC CGACCCGCCC TGCCTCAAAT GTCACGCTGC CCAGGGCTAT
GCCCAGGGAG ACGTCATCGG GGGCATCAGT GTCTCGGTGC CTTTGCAAAC CTATCTTGGC
CTCGCCGGGC AGCAACGCCT GCACCTCGTC ATCGCGCATC TGGTCATCGG CCTGCTCGGT
CTGACCGGCC TTGGCGCGAG TCATGTTCAT TTCCGCAATT ACAAACGCTC ATTGCGCGAA
AGCGAGGACC GATTCGAGCA ACTCGCCGAA CACAGCCGCA CCGTGACCTG GGAAGTGGAT
GCCGGCGGCC TCTTCATCTA TGTCTCCAAT GCTTCGGCTT CCGTTCTGGG GTATGCCCCG
GAAGAGCTCG TCGGATGCAT GAGCTTTTTC GACCTGCATC CGGAGGACGG GCGCGAGGCT
TTCAAATCCG CGGCCTTTGA GGTCTTTGGC CGAAGAGGGG AATTCACGAA TTTCGAAAAC
CGGGCCCTCA CCCGGGATGG GCGCGAGATC TGGCTTTCCA CCAATGGCTT TCCGCTGCTT
GATGGCGCGG GGAATCTCCT GGGCTATCGC GGGAACGACA CCGACATTAC CGCAGAAAAA
GAGGCCCGGA CCCAGCTCGC CCAGCGCGAA GCCATGCTTT CCTCCATGCT TGAAAACCTG
CCCGTGGACT TCTGGGCGCG GGACAAGGAT GGCCGAGGCA TCATCCAGAG CCGACTCAGC
AAGGAGCACT GGGGAGATTT CTGCTCAGCG AATTTCGACG CCCAGTCCAG GCATTCCCAC
AATGCCGAGA AATGGAAGGC CAAGCACGAC CGCCTCTATG CCGGGGAAAC CATCGAGCAG
GAAGAGGTTC TGGTCCTGAC CGACGGGCGG CATCGCATCT TTCATTCCAT GGGCGCGCCC
ATCGTCATGC AGGGCGAGGT GGTCGGCATC CTGGGCATCA ACCTGGACAT AACCGAGCGC
AGGTACATCG AGGCGCAGCT GGAGCGCGAA CGCGTCCTCA GCAAGGCGAT CATCGACAGC
GTTCCAGGCC TGCTCTACCT GTACGAGCAA AACGGGCGGC TGGTGCGCTG GAACAGGATG
CACTGCGAAC TGACGGGCTA CTCGGACCGG GAGCTTGGCG CCATGCACCT CATGGACTGG
TACCGGGACG ACCCCGCCTC TCAGCAGAAG GTCGCCAGGG CCATTGAGCG CGTGCTTGAA
GAGGGCATCG GCACCGAGGA GGCCGAGCTT CAGACCAAGG ACGGACGGCG CATCCCCTTC
TTCTTGACCG CCGTGCGTCT GGAACTTGAA GGCCGCATCT ATTTCACCGG CATCGGCATC
GACATCACCG AGCGCAAGCG CTCCGAGGAG GCCCTGCGCC TGAGCGAGGA GCGCCTTGCT
TTGGCTCTGG AAGCTTCCAG TGACGGCCTT TGGGACTGGA ACTTTCAGAC GGGTGAGGTG
TATTTCAGTC CGCGCTACCT GGGCATGCTC GGGTATGATC CGGGCGATCT CGAACTCAAT
ATCACCGGCT GGGAAAAGCT CCTGCATCCC GATGACTTCG AGAAGACCAA GCGAACCGAG
TTGGACCACA TCGAGCGCGG CGAGCCCTTC GCCCTTGAAT TCCGGCTTCG CAACAAGGCC
GGGGATTGGC AGTGGGTCAT GAGCCGCGGC AAGGTCGTCG AATGGGACGC CGCCGGGCGG
CCGCTACGCA TGGTCGGCAC CCATGTGGAC ATCGATCAGC GCAAGCGCAT GGAGAACGAG
CTGGTCAAGG CCAAGGAGGC CGCCGAAGCC GCCAGTCTGG CCAAATCGGA GTTCCTGGCC
AATATGAGCC ACGAGATTCG CACCCCCTTG AACGGCATCA TGGGCATGAT CCAGCTTCTG
GAGTCCGGGG CGCGGGACGA GGAGCAGCAC AGGACCTGCG CCATGGCTTT GCAGGCCACG
GGCCGGCTGA CACGGCTGTT GTCCGACATC CTCGACCTGT CGAGGGTGGA GGCGGGCAAG
ATGCAGATGC GCATCGAACC GTTCAACCTC CGGGACGCGC TTGGGCAGAG CGTCGATCTC
TTCAATCCCA TCGCCATGCA GGCCGGGCTG GAGTTTCGGC ATCATTTCGA CCCTGCGCTT
CCAGAATTCG TCGTCGGGGA CTCTGTGCGC TTCCAGCAGG TGCTCATGAA CCTGATCGGC
AACGCCTTCA AGTTCACGAC CAAGGGGTTC GTTGCCGTCG AGGCCCACCC CTTGCCGTCG
CACGAGAGCG ACAGCGTCCG GGTATTGTTC TCGGTAGCGG ACTCCGGACG AGGCATCGAG
GACGCGGCCC TTTCCGCCCT GTTCCAGCCC TTCAGCCAGG TCACCAGGGG GTTCACCCGC
GATCATCAGG GCGCGGGCCT CGGTCTGGCC ATCACCAAGC GGTTGATCGC CCTCATGGGC
GGCACCATGG CCGTGGAGAG CGAACCCGGC TGCGGCACCA CATTCTCGTT CAGCCTGTCC
TTCAAAACAG CGCCTGGTGC CACGACTGTT CCGGAAGCGT TAGGCGAAGT TCCATCGCCT
TCGCGTCCGG TGCGCATCCT CCTGGCCGAG GACGACGAGG TCACCATTTT CGCCACGCGC
GCCCTGCTTA CGCGGGCCGG GTACGAGGTC AGCGTCGCTC GCACCGGGCA CGAGGCGGTC
TCCTTGCTCC GGGAACAGGA TTTCGGCCTG GTGCTCATGG ACGTTCAGAT GCCCGGCATG
GACGGCGTCG AGGCGACCCG GATCATCCGC AGCGATCCGG GCCTTGGCGA CAAGAGAAGC
ATTCCCATCA TCGCCCTGAC GGCCTTTGCC ATGGACGGAG AAAAGGAAAT CTTCCTGGCG
GCCGGGATGG ATGGGTATGT GGCCAAGCCG GTCGGAATGA AAGACCTGAC CCGGGCCATC
GACGCCGTTT TGTCGGGCCG GGCAAGCCGT TCATAG
|
|---|
| Protein sequence | MTRLRWTILA AVFWIMLLAL SLGWNWQHLE RSLIGLAESE ANAAFHKDVT YRLWAAMQGG
VYVPLSENTP PNPYLKHIPQ RDVETTGGEK LTLVNPAYMT RQVHELGKEK YGLRGHITSL
EPLRPENAPD EWETKVLRSF VEGSLKETTR QSFDGQPYFR LMRPLFADPP CLKCHAAQGY
AQGDVIGGIS VSVPLQTYLG LAGQQRLHLV IAHLVIGLLG LTGLGASHVH FRNYKRSLRE
SEDRFEQLAE HSRTVTWEVD AGGLFIYVSN ASASVLGYAP EELVGCMSFF DLHPEDGREA
FKSAAFEVFG RRGEFTNFEN RALTRDGREI WLSTNGFPLL DGAGNLLGYR GNDTDITAEK
EARTQLAQRE AMLSSMLENL PVDFWARDKD GRGIIQSRLS KEHWGDFCSA NFDAQSRHSH
NAEKWKAKHD RLYAGETIEQ EEVLVLTDGR HRIFHSMGAP IVMQGEVVGI LGINLDITER
RYIEAQLERE RVLSKAIIDS VPGLLYLYEQ NGRLVRWNRM HCELTGYSDR ELGAMHLMDW
YRDDPASQQK VARAIERVLE EGIGTEEAEL QTKDGRRIPF FLTAVRLELE GRIYFTGIGI
DITERKRSEE ALRLSEERLA LALEASSDGL WDWNFQTGEV YFSPRYLGML GYDPGDLELN
ITGWEKLLHP DDFEKTKRTE LDHIERGEPF ALEFRLRNKA GDWQWVMSRG KVVEWDAAGR
PLRMVGTHVD IDQRKRMENE LVKAKEAAEA ASLAKSEFLA NMSHEIRTPL NGIMGMIQLL
ESGARDEEQH RTCAMALQAT GRLTRLLSDI LDLSRVEAGK MQMRIEPFNL RDALGQSVDL
FNPIAMQAGL EFRHHFDPAL PEFVVGDSVR FQQVLMNLIG NAFKFTTKGF VAVEAHPLPS
HESDSVRVLF SVADSGRGIE DAALSALFQP FSQVTRGFTR DHQGAGLGLA ITKRLIALMG
GTMAVESEPG CGTTFSFSLS FKTAPGATTV PEALGEVPSP SRPVRILLAE DDEVTIFATR
ALLTRAGYEV SVARTGHEAV SLLREQDFGL VLMDVQMPGM DGVEATRIIR SDPGLGDKRS
IPIIALTAFA MDGEKEIFLA AGMDGYVAKP VGMKDLTRAI DAVLSGRASR S
|
|---|
| |