| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1513 |
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| Symbol | |
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| ID | 8377182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | - |
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| Start bp | 1712138 |
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| End bp | 1715365 |
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| Gene Length | 3228 bp |
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| Protein Length | 1075 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645000740 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_003158022 |
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| Protein GI | 256829294 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.533351 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTACAC GTTCTTGTCT CGACTCCCTT CTATTCCGGG CCGTAGTGAA GCCTTTTTTC
GGATTTACGA AGCTTATTGT CGTATTGGTT TTGGTCGGTG TTTTTCTTGT GCCATCCGGC
AGCATTTTTG CCGCTCCAAA TTCTGTTCAA AAAATCCGCC TGCAGCTTAA ATGGCGACAT
CAGTTCCAGT TTGCCGGGTA CTACGCGGCC GTGGCCAAGG GGTATTTCAA GGACGAAGGG
CTGCAGGTCG AACTGTTGGA GGGTTCGCCA GGTATTGATC CGACAGCCAA ACTGCTGTCC
AAAGAAGCCG AGTTCGCAGT GGATTCCCCG GCGATTCTCA TCAAACGCCA GCAAGGCAAA
CCTCTGGTCG CTCTGGCCGC CATTTTTCAG CATTCGCCGA GCGTCATGAT GACGCTCAAG
GAGTCACGTC TCGATTCTCC GCACGACCTA AGCGGAAAAC GTGTCATGAT GACCTCCGCA
ACTGATCCGG AAAACATGGC CATGCTCGTC AGCGAGGGGA TTTCCCTGGA GAGCATGACC
CAGGTTCCGC ATTCCTGGAA TATCGAGGAT CTCGTGTCCG GGCGGGTTGA CGCCATGAGC
GCCTATCTGA CCAGCGAACC ATATCTCATG CAGGAGCGCG GTGTTTCCGT TTCGTTCATC
AGGCCCATCA ATTACGGAGT GGATTTCTAC GGCGATTGCC TGGTCACGAC CCAGGATCAG
GTCTCAGGGC ATCCGGAGCG GGTCGAGGCC TTTCTGCGTG CGGTGCAGCG CGGCTGGCGC
TATGCCATGG AAAATCCCGA AGAGATTGCC ACGCTCATTC GCGACCAATA TTCCACGCAG
CTTTCTTTGC AGCATCTTCT CTTTGAAGCC CAGACCATGC GCCGGCTGAT CCGCCCGGAT
TTTGTCGAGA TCGGTCATAT GAATCCCGAG CGCTGGCAGC ATATAGCCGG GCTTTATGTC
AAGCTGGGGA TGATGGGCCC GGATTATGAC CTGTCCGAAT TCCTGTATCC CGAATTCAAG
CAGCGTCTGC AGGCGGGCAA GGAGCAAGCC ATCCGCACGA CGTTGATTGC GCTGGGCGTT
TTCCTGTTTG TCGGGACCGG GATCACGGCC ATGCTTTTCT TTTTCAATAC GCGACTCAGC
AGACAGGTCC AGGAGCGTAC CGCGGCTCTG TCTGCCAGTG AGCGCAGTTT CAGGGCTTTT
TTCGAGATGG CAAGCGTAGG CGTTGCGCAG TTTGAGGGCG ATACGCGACG TTTTATCAAG
GTGAACCGGA AATTTTCCGA CCTGATGGGA TATTCCGCTG CGGAACTCGG CACGCTTTCT
CCCCGCGATC TCGTGCATCC GGATGATTGG CAAGCCTCCG AGGAAGCCAT GAAAAGCCTT
GTCACAAAAG AGCAGAAGGA AATCACGCTG GAAAAACGCT ATGTGCGCAA AGGCGGCGGC
GTTTTTTGGG GGTTGGCGAC CATCTCCCCC CTGTGGGACC AGGGCGAACA TCCTGAATCC
TATCTGGCGG TGGTCCGCGA CATCACTGTG GCCAAAAAGG CCGAGGAGAA ACTGCTGCTG
GCCGCCAAGG TCTTTGAGAA CACAGTCGAA GGCATTGTGG TCACGAACAC TGAAGGAACA
ATCGAGCAGG TAAACCCCGG GTTCACGGTT ATCACTGGGT ACTCCGCCGA TGAAGCCGTC
GGCAGCAATC CGCGCATTCT CAAATCCGAC CGACATGCCC AGCATTTCTA TCAAGAGATG
TGGACCAAGC TGACGCAGGA TGGGCACTGG GCCGGAGAAA TCTGGAACCG CCGCAAGGAC
GGCGAATCCT ATCCCGAGTG GCTGACCATA AGCGCGGTCA AGAACGAGGC GGGGCAGACC
ACCAACTACG TCTCCATTTT TCACGACATA ACCGAGCTCA AGCGCCAGCA GGACGCGCTG
GAATACCAGG CGCAGCACGA CGCCCTGACC GGCATGCCCA ACCGCATCCT GCTGGGCGAC
CGGCTGCGCA TGGCGCTGGC GCAGCTAGCG CGCAGCGGGG GCAAGCTTGC GCTTCTTTTT
TTCGATCTGG ATAACTTCAA GACCATCAAC GACGGCTTGG GGCACGGCGT CGGCGATGAG
TTGCTGGTGG ATCTTTCCCG TCGCCTGGAG AGGCTCTTGC GTAGCGGGGA CACCCTGGCC
CGCTTGGGCG GAGATGAGTT TCTGATTCTA CTGCCCGAGA TCGAATCGGT CGATGCCGCC
AGCCATATCG CGACCCGGAT GCTTGATGCC CTGAAAGCGC CGTTTCATCA TGGGGATGTC
GAATATTTCG TCACGGCCAG CATCGGCCTG ACCATCGCCC CCGATGATGG TAACGAGGCG
CCGAAACTGA TCAAGAACGC GGATATGGCC ATGTACCGGG CCAAAAGCAT GGGACGCAAC
AATTACCAGT ATTTCACCCC GGAAATGGAT GTGGCCGCGC ATCGGCGCAT TTCCATGGAG
TACAAGCTGC GCAAGGCCAT CGAGGCGCAG GAGTTTGAAC TCTTTTACCA GCCGCTGGTG
CATATTCAGA GCGGACACAT TCTCGGGGCC GAGGCCCTGA TCCGTTGGCG CTGCGAAGGC
AAGCTCATTT CCCCGGCGGA GTTCATTCCT CTGGCCGAGG AGTCGGCGCT CATCCTGCCC
CTGGGCGACT GGGTTTTGCG GACGGCTGCG CATCAGGCCA AGCTCTGGCA GGATGCCGGG
CATGATCTGA CCATGTCCGT GAACATCTCC TCTCGTCAGT TTTCCGGAGC GGATTTGGCC
GTGACGCTGC GCGAGGTCCT TCTGGATACG GAGTTGCGTC CGGGAAGATT GTATTTCGAG
ATCACCGAAT CCATGCTCAT GGGCGATGTG AGCAAGGCCG AGACGACGTT GCTTAATCTG
CGTGAAGCAG GAGGAACCTT TTTCCTCGAC GACTTCGGAA CAGGTTATTC CTCCCTTTCC
TATCTGAAGC GCCTGCCCAT CGACGGTCTC AAAATCGATC GCTCCTTCAT AAAGGATATC
ACCGATGATT CAGACAGCCG GGCCATTGTC GCGGCCATTG TGTCCATGGC CCGGACCCTC
AATCTGCGGA TCGTCGCAGA GGGGGTGGAA ACACAGGCGC AGCGCGGCTT GCTGGCTTCC
ATGGGCCCCA TCGTGCTGCA GGGATATCTT GCCAGCAGAC CGGTTCCCGC GCAGGACTTC
GAGGCCCTGT TGTCAAGGGA CGCGCTGCTC CCGCCACTCG TGATCTGA
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| Protein sequence | MSTRSCLDSL LFRAVVKPFF GFTKLIVVLV LVGVFLVPSG SIFAAPNSVQ KIRLQLKWRH
QFQFAGYYAA VAKGYFKDEG LQVELLEGSP GIDPTAKLLS KEAEFAVDSP AILIKRQQGK
PLVALAAIFQ HSPSVMMTLK ESRLDSPHDL SGKRVMMTSA TDPENMAMLV SEGISLESMT
QVPHSWNIED LVSGRVDAMS AYLTSEPYLM QERGVSVSFI RPINYGVDFY GDCLVTTQDQ
VSGHPERVEA FLRAVQRGWR YAMENPEEIA TLIRDQYSTQ LSLQHLLFEA QTMRRLIRPD
FVEIGHMNPE RWQHIAGLYV KLGMMGPDYD LSEFLYPEFK QRLQAGKEQA IRTTLIALGV
FLFVGTGITA MLFFFNTRLS RQVQERTAAL SASERSFRAF FEMASVGVAQ FEGDTRRFIK
VNRKFSDLMG YSAAELGTLS PRDLVHPDDW QASEEAMKSL VTKEQKEITL EKRYVRKGGG
VFWGLATISP LWDQGEHPES YLAVVRDITV AKKAEEKLLL AAKVFENTVE GIVVTNTEGT
IEQVNPGFTV ITGYSADEAV GSNPRILKSD RHAQHFYQEM WTKLTQDGHW AGEIWNRRKD
GESYPEWLTI SAVKNEAGQT TNYVSIFHDI TELKRQQDAL EYQAQHDALT GMPNRILLGD
RLRMALAQLA RSGGKLALLF FDLDNFKTIN DGLGHGVGDE LLVDLSRRLE RLLRSGDTLA
RLGGDEFLIL LPEIESVDAA SHIATRMLDA LKAPFHHGDV EYFVTASIGL TIAPDDGNEA
PKLIKNADMA MYRAKSMGRN NYQYFTPEMD VAAHRRISME YKLRKAIEAQ EFELFYQPLV
HIQSGHILGA EALIRWRCEG KLISPAEFIP LAEESALILP LGDWVLRTAA HQAKLWQDAG
HDLTMSVNIS SRQFSGADLA VTLREVLLDT ELRPGRLYFE ITESMLMGDV SKAETTLLNL
REAGGTFFLD DFGTGYSSLS YLKRLPIDGL KIDRSFIKDI TDDSDSRAIV AAIVSMARTL
NLRIVAEGVE TQAQRGLLAS MGPIVLQGYL ASRPVPAQDF EALLSRDALL PPLVI
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