Gene Dbac_1513 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_1513 
Symbol 
ID8377182 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp1712138 
End bp1715365 
Gene Length3228 bp 
Protein Length1075 aa 
Translation table11 
GC content57% 
IMG OID645000740 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_003158022 
Protein GI256829294 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.533351 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTACAC GTTCTTGTCT CGACTCCCTT CTATTCCGGG CCGTAGTGAA GCCTTTTTTC 
GGATTTACGA AGCTTATTGT CGTATTGGTT TTGGTCGGTG TTTTTCTTGT GCCATCCGGC
AGCATTTTTG CCGCTCCAAA TTCTGTTCAA AAAATCCGCC TGCAGCTTAA ATGGCGACAT
CAGTTCCAGT TTGCCGGGTA CTACGCGGCC GTGGCCAAGG GGTATTTCAA GGACGAAGGG
CTGCAGGTCG AACTGTTGGA GGGTTCGCCA GGTATTGATC CGACAGCCAA ACTGCTGTCC
AAAGAAGCCG AGTTCGCAGT GGATTCCCCG GCGATTCTCA TCAAACGCCA GCAAGGCAAA
CCTCTGGTCG CTCTGGCCGC CATTTTTCAG CATTCGCCGA GCGTCATGAT GACGCTCAAG
GAGTCACGTC TCGATTCTCC GCACGACCTA AGCGGAAAAC GTGTCATGAT GACCTCCGCA
ACTGATCCGG AAAACATGGC CATGCTCGTC AGCGAGGGGA TTTCCCTGGA GAGCATGACC
CAGGTTCCGC ATTCCTGGAA TATCGAGGAT CTCGTGTCCG GGCGGGTTGA CGCCATGAGC
GCCTATCTGA CCAGCGAACC ATATCTCATG CAGGAGCGCG GTGTTTCCGT TTCGTTCATC
AGGCCCATCA ATTACGGAGT GGATTTCTAC GGCGATTGCC TGGTCACGAC CCAGGATCAG
GTCTCAGGGC ATCCGGAGCG GGTCGAGGCC TTTCTGCGTG CGGTGCAGCG CGGCTGGCGC
TATGCCATGG AAAATCCCGA AGAGATTGCC ACGCTCATTC GCGACCAATA TTCCACGCAG
CTTTCTTTGC AGCATCTTCT CTTTGAAGCC CAGACCATGC GCCGGCTGAT CCGCCCGGAT
TTTGTCGAGA TCGGTCATAT GAATCCCGAG CGCTGGCAGC ATATAGCCGG GCTTTATGTC
AAGCTGGGGA TGATGGGCCC GGATTATGAC CTGTCCGAAT TCCTGTATCC CGAATTCAAG
CAGCGTCTGC AGGCGGGCAA GGAGCAAGCC ATCCGCACGA CGTTGATTGC GCTGGGCGTT
TTCCTGTTTG TCGGGACCGG GATCACGGCC ATGCTTTTCT TTTTCAATAC GCGACTCAGC
AGACAGGTCC AGGAGCGTAC CGCGGCTCTG TCTGCCAGTG AGCGCAGTTT CAGGGCTTTT
TTCGAGATGG CAAGCGTAGG CGTTGCGCAG TTTGAGGGCG ATACGCGACG TTTTATCAAG
GTGAACCGGA AATTTTCCGA CCTGATGGGA TATTCCGCTG CGGAACTCGG CACGCTTTCT
CCCCGCGATC TCGTGCATCC GGATGATTGG CAAGCCTCCG AGGAAGCCAT GAAAAGCCTT
GTCACAAAAG AGCAGAAGGA AATCACGCTG GAAAAACGCT ATGTGCGCAA AGGCGGCGGC
GTTTTTTGGG GGTTGGCGAC CATCTCCCCC CTGTGGGACC AGGGCGAACA TCCTGAATCC
TATCTGGCGG TGGTCCGCGA CATCACTGTG GCCAAAAAGG CCGAGGAGAA ACTGCTGCTG
GCCGCCAAGG TCTTTGAGAA CACAGTCGAA GGCATTGTGG TCACGAACAC TGAAGGAACA
ATCGAGCAGG TAAACCCCGG GTTCACGGTT ATCACTGGGT ACTCCGCCGA TGAAGCCGTC
GGCAGCAATC CGCGCATTCT CAAATCCGAC CGACATGCCC AGCATTTCTA TCAAGAGATG
TGGACCAAGC TGACGCAGGA TGGGCACTGG GCCGGAGAAA TCTGGAACCG CCGCAAGGAC
GGCGAATCCT ATCCCGAGTG GCTGACCATA AGCGCGGTCA AGAACGAGGC GGGGCAGACC
ACCAACTACG TCTCCATTTT TCACGACATA ACCGAGCTCA AGCGCCAGCA GGACGCGCTG
GAATACCAGG CGCAGCACGA CGCCCTGACC GGCATGCCCA ACCGCATCCT GCTGGGCGAC
CGGCTGCGCA TGGCGCTGGC GCAGCTAGCG CGCAGCGGGG GCAAGCTTGC GCTTCTTTTT
TTCGATCTGG ATAACTTCAA GACCATCAAC GACGGCTTGG GGCACGGCGT CGGCGATGAG
TTGCTGGTGG ATCTTTCCCG TCGCCTGGAG AGGCTCTTGC GTAGCGGGGA CACCCTGGCC
CGCTTGGGCG GAGATGAGTT TCTGATTCTA CTGCCCGAGA TCGAATCGGT CGATGCCGCC
AGCCATATCG CGACCCGGAT GCTTGATGCC CTGAAAGCGC CGTTTCATCA TGGGGATGTC
GAATATTTCG TCACGGCCAG CATCGGCCTG ACCATCGCCC CCGATGATGG TAACGAGGCG
CCGAAACTGA TCAAGAACGC GGATATGGCC ATGTACCGGG CCAAAAGCAT GGGACGCAAC
AATTACCAGT ATTTCACCCC GGAAATGGAT GTGGCCGCGC ATCGGCGCAT TTCCATGGAG
TACAAGCTGC GCAAGGCCAT CGAGGCGCAG GAGTTTGAAC TCTTTTACCA GCCGCTGGTG
CATATTCAGA GCGGACACAT TCTCGGGGCC GAGGCCCTGA TCCGTTGGCG CTGCGAAGGC
AAGCTCATTT CCCCGGCGGA GTTCATTCCT CTGGCCGAGG AGTCGGCGCT CATCCTGCCC
CTGGGCGACT GGGTTTTGCG GACGGCTGCG CATCAGGCCA AGCTCTGGCA GGATGCCGGG
CATGATCTGA CCATGTCCGT GAACATCTCC TCTCGTCAGT TTTCCGGAGC GGATTTGGCC
GTGACGCTGC GCGAGGTCCT TCTGGATACG GAGTTGCGTC CGGGAAGATT GTATTTCGAG
ATCACCGAAT CCATGCTCAT GGGCGATGTG AGCAAGGCCG AGACGACGTT GCTTAATCTG
CGTGAAGCAG GAGGAACCTT TTTCCTCGAC GACTTCGGAA CAGGTTATTC CTCCCTTTCC
TATCTGAAGC GCCTGCCCAT CGACGGTCTC AAAATCGATC GCTCCTTCAT AAAGGATATC
ACCGATGATT CAGACAGCCG GGCCATTGTC GCGGCCATTG TGTCCATGGC CCGGACCCTC
AATCTGCGGA TCGTCGCAGA GGGGGTGGAA ACACAGGCGC AGCGCGGCTT GCTGGCTTCC
ATGGGCCCCA TCGTGCTGCA GGGATATCTT GCCAGCAGAC CGGTTCCCGC GCAGGACTTC
GAGGCCCTGT TGTCAAGGGA CGCGCTGCTC CCGCCACTCG TGATCTGA
 
Protein sequence
MSTRSCLDSL LFRAVVKPFF GFTKLIVVLV LVGVFLVPSG SIFAAPNSVQ KIRLQLKWRH 
QFQFAGYYAA VAKGYFKDEG LQVELLEGSP GIDPTAKLLS KEAEFAVDSP AILIKRQQGK
PLVALAAIFQ HSPSVMMTLK ESRLDSPHDL SGKRVMMTSA TDPENMAMLV SEGISLESMT
QVPHSWNIED LVSGRVDAMS AYLTSEPYLM QERGVSVSFI RPINYGVDFY GDCLVTTQDQ
VSGHPERVEA FLRAVQRGWR YAMENPEEIA TLIRDQYSTQ LSLQHLLFEA QTMRRLIRPD
FVEIGHMNPE RWQHIAGLYV KLGMMGPDYD LSEFLYPEFK QRLQAGKEQA IRTTLIALGV
FLFVGTGITA MLFFFNTRLS RQVQERTAAL SASERSFRAF FEMASVGVAQ FEGDTRRFIK
VNRKFSDLMG YSAAELGTLS PRDLVHPDDW QASEEAMKSL VTKEQKEITL EKRYVRKGGG
VFWGLATISP LWDQGEHPES YLAVVRDITV AKKAEEKLLL AAKVFENTVE GIVVTNTEGT
IEQVNPGFTV ITGYSADEAV GSNPRILKSD RHAQHFYQEM WTKLTQDGHW AGEIWNRRKD
GESYPEWLTI SAVKNEAGQT TNYVSIFHDI TELKRQQDAL EYQAQHDALT GMPNRILLGD
RLRMALAQLA RSGGKLALLF FDLDNFKTIN DGLGHGVGDE LLVDLSRRLE RLLRSGDTLA
RLGGDEFLIL LPEIESVDAA SHIATRMLDA LKAPFHHGDV EYFVTASIGL TIAPDDGNEA
PKLIKNADMA MYRAKSMGRN NYQYFTPEMD VAAHRRISME YKLRKAIEAQ EFELFYQPLV
HIQSGHILGA EALIRWRCEG KLISPAEFIP LAEESALILP LGDWVLRTAA HQAKLWQDAG
HDLTMSVNIS SRQFSGADLA VTLREVLLDT ELRPGRLYFE ITESMLMGDV SKAETTLLNL
REAGGTFFLD DFGTGYSSLS YLKRLPIDGL KIDRSFIKDI TDDSDSRAIV AAIVSMARTL
NLRIVAEGVE TQAQRGLLAS MGPIVLQGYL ASRPVPAQDF EALLSRDALL PPLVI