| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1432 |
|---|
| Symbol | |
|---|
| ID | 8377097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | - |
|---|
| Start bp | 1618990 |
|---|
| End bp | 1621020 |
|---|
| Gene Length | 2031 bp |
|---|
| Protein Length | 676 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 645000656 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_003157942 |
|---|
| Protein GI | 256829214 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00629905 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGATG AAATAAAATC AAAAGCATTA CTTATCCAAG AACTTACAGA ATTGCGTTCG
CAATTTGTCA CCTTGAAAAA ATCGATGACT GAGTCAAAAT CCGATGTGCT TTTGACAGAG
GAAGCCCTGA ACTACGCCCA AAGTATCCTG GAAACCATAC GAGAACCGCT TCTGATTCTG
GATAAAGACA TGAAGGTTAT CTCGGCAAGT CGTAATTTTT ATAACACCTT CAGTGTAAAT
CCTGATGAGA CGATAGGGAG TGTTCTCTAT GATCTTGGTA ACAAGCAGTG GGATATTCCA
AAACTACGGG AATTACTTGA GACAATAATT CCCCGAGAAA CAAATTTTGG AAACTACGAA
GTTGAACACG TTTTTGATTC CATCGGCAGA CGGGTCATGC TTTTGAATGC CCGGCAGATT
CAGCGCACTT CGGACAAAGA TCCGATCATC CTGTTGGCTA TTGAGGATAT CACTGAACGT
AAGCGATTGG AGGATTTGTT AGCGGATTCT GAAGAGCGTT ATCGACGTCT TTTTGAGACA
GCCAATGATG GGATTGTGCT GCTAGAAAAA CGTGAAGGAA CGATAACTCA TGCCAATCCG
GCATTCGAGA AGATGTTTGG CTATAACGTA AAGGAAATTC TTGGAAAGCA TCTAGAAGAT
ATTGGCATTT TTCTCGAAAA CAGTGATTTC CAGATTATAA TGCAAAAATT AAGAGATACA
GGCGTAATAA ATTATGATGA TGTCAGTATA AAAACAAATT TTAATCTTGA TATCGATACA
GATATATATT TAGTTGATAG AGCATCTTTA GTACAATGCA ATATTAGAGA CATGACTCAG
AACAAAATAA ATTTAAAATC TCTTATACGG GCAACAAAAC AAGCTGAGAT AGCGAACATA
GCAAAATCCG AATTTCTTGC CAATATGAGC CATGAAATTC GCACCCCACT CAACGGTATT
ATGGGCATGA TTCAGCTTCT GGATGGCACA CCTGTCGGTG CTGATCAAAA TAAGTATATT
GAGTTGGCTT TGACGTCGTG CAACCGCCTG ACCCGTTTAC TTTCAGACAT TCTGGACTTG
TCTCGAATTG AAGCGGGCAT GATGGAAATC CACGAATCAA AATTCCGCTT TGCGGATTTG
CGTAACTCAA TCTTAGGACT CTTCGCCGTG GAATCCTTGA CCAAGGCTGT CACTTTAAAA
TGCATTATTG ATCCAACCAT TCATCCCGAA GTTATTGGTG ATGAAGGGAG GGTCCTCCAA
ATTTTATTCA ATTTAGTTGG AAATGGATTA AAGTTTACAA AAGAAGGTTC TGTCACTGTT
GAAATAACTC CATTGGGATC AGAAAAAAAT AATGATTACA GAGTTCTGTT TACTGTTTCT
GATACAGGAA TTGGTATACA CGAAGATCAT CTTAAAAACC TATTCAAACC TTTTGTCCAG
ATAGAAAAAT CCTATACTCG TAAGTACCAA GGAGCTGGAC TTGGCCTGTC TATAGTCAAA
AAGCTTGTCC ATTTGATGGG TGGAAGCATT GAAGTTGATA GCGTTGTCGG TGAAGGAACG
TCAATGAACG TAGTTTTACC TTTCAAACAG TCGATCGAAG CGAGCATATT AAAGCATCAA
ACCGTACAGA TTGCGGAAAA GCAAAAATTG CGAATTCTTC TGGCTGAAGA CGATCCATCC
AACCAGTTTG CAATGATCAA ACTGCTGGAG AAGGCAGGAA ATGAAGTGAT GCTGGCAGAG
AATGGCAAGC AGGCCATTGA CCTGCTGAAG ATTCACGACT TTGACTGTAT ACTTATGGAC
GTGCAGATGC CCTTGATGGA CGGCTTGGAG GCGACGAAGA CTATTCGTTC CTCAGCGGAT
CTTGGCCCCA AAAAGGACAT ACCGATCATT GCCATGACCG CCTATGCCAT GAGGGGAGAT
AGGGAGACGT TCCTAAAATG GGGAATGAGC GATTATGTTG GGAAGCCGGT GCGAATGGAT
GATTTGGCGG TGGCCTTAGA CCGCGTAACC GCCTTCAGTC GCTCGGGATG A
|
|---|
| Protein sequence | MDDEIKSKAL LIQELTELRS QFVTLKKSMT ESKSDVLLTE EALNYAQSIL ETIREPLLIL
DKDMKVISAS RNFYNTFSVN PDETIGSVLY DLGNKQWDIP KLRELLETII PRETNFGNYE
VEHVFDSIGR RVMLLNARQI QRTSDKDPII LLAIEDITER KRLEDLLADS EERYRRLFET
ANDGIVLLEK REGTITHANP AFEKMFGYNV KEILGKHLED IGIFLENSDF QIIMQKLRDT
GVINYDDVSI KTNFNLDIDT DIYLVDRASL VQCNIRDMTQ NKINLKSLIR ATKQAEIANI
AKSEFLANMS HEIRTPLNGI MGMIQLLDGT PVGADQNKYI ELALTSCNRL TRLLSDILDL
SRIEAGMMEI HESKFRFADL RNSILGLFAV ESLTKAVTLK CIIDPTIHPE VIGDEGRVLQ
ILFNLVGNGL KFTKEGSVTV EITPLGSEKN NDYRVLFTVS DTGIGIHEDH LKNLFKPFVQ
IEKSYTRKYQ GAGLGLSIVK KLVHLMGGSI EVDSVVGEGT SMNVVLPFKQ SIEASILKHQ
TVQIAEKQKL RILLAEDDPS NQFAMIKLLE KAGNEVMLAE NGKQAIDLLK IHDFDCILMD
VQMPLMDGLE ATKTIRSSAD LGPKKDIPII AMTAYAMRGD RETFLKWGMS DYVGKPVRMD
DLAVALDRVT AFSRSG
|
|---|
| |