Gene Dbac_1426 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_1426 
Symbol 
ID8377091 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp1609123 
End bp1612362 
Gene Length3240 bp 
Protein Length1079 aa 
Translation table11 
GC content59% 
IMG OID645000650 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_003157936 
Protein GI256829208 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.688315 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAAAA CCATGCCCCT GAAAAATAAC GGTGACCTGC GTTTTGAAGA TTTCTTCGAT 
CTGCGGGAGG TCCAGATTAT TCAGGACAGT TTTGCCATGG CTACGGGCGT CGCATCTCTG
ATCACTTCTC CCGAAGGGCT TCCATTAACC AGGCCAAGCA ATTTTACCCG GCTCTGCAGT
CAGGTCATCC GCGGATCCAG AGCGGGAAAC GAGAACTGCA TGCGCTCCGA CGCCCTGCTT
GGTGCGTACA ACCCAAGCGG CCCGAACGTA AGCCGCTGCA TGAGCGGCGG GTTGTGGGAT
GCAGGCGTGA GCATCACCGT GGGCGGCAGG CATGTCGCCA ACTGGCTCAT CGGGCAGGTG
CGCTCCAGCC TCGCAGACGA GGAGGCCATG CTCGGCTATG CGAAAACCAT CGGCGCCGAC
CCGCAGGAAT ACCGCGAGGC CATGAAAGAG GTGCCTTTCA TGGAAGAGGC GCAGTTCCGC
CGCGTGGCTG ATGCCCTTTT CGTCATCGCC AACTCCCTGT CCGAAAAAGC CTATCAGCAA
ACCATGCTGC TGGAGGAAAA AAGGGAGCGG CAGAAAATGG ACGCCATGCG CGAGATGCTC
ATGGATCGAA GCCTCGACGC CATTGTCGTC GTCGACCAGA ACCATCGCAT CATCGAAGCC
AACAGGCGCT TTGCGGACAT GCTCGGCTAC ACTCCCGCCG AGGTGCTGGG TTTGCGCACC
TGGGACTACG AAGCGAACAT GACCGAAGGC ATGATCAAAG AGCTGTTTTC CGATTTTTCG
CAAGTCAATT CGGTTTTCGA GACCAGGCAT CGCAGAAAGG ACGGGTCGAT CTTCGATGTG
GAGGTGACTA CGGCCGGGGC CAGCATAGAC GGCCGGTCCT GCGTCCTGGC CTTCAGCCGG
GACATTACCA CGCGCAAGGA AGCCGAGCGG CAGCTGCGCC AGAGCGAAAA GCATTTCCGG
GCGCTTTTCG AACTGAGCCG GGACGGGTTC ATCCTGGCCG ACGCGGAAGG ACGCTTTCTG
GATGCCAACA AGGCATACTG CGACATGACG GGCTATTCGC TGCCGGAGCT ACGCGCCCTG
GGCGATTTCT ACGCGCTCAC ACCCGAGAAA TGGCATGACT GGCAGCGGGA CGAGATCTGG
ACGAGGCTGT TCAAATCCGG CGACACGGGA GTGTACCGGA AAGAATACAT CCACAAGGAC
GGGCACGTGT TCCCGGTGGA ACTGCGGGAT TTCGCGGTCC ATGACGACCA CGGCGTCGTC
AGGTACGCCT GGGGCATCGT GCGGGACATT TCCGAACGCG TACGGACCGA GGAGCGGATG
CGCTCCCTCA TGCAGATGGT CGAGCAGAGT CCGGCCTGTA TCGTCATGAC CGACCCGCAA
GGCAACATCG AATACGTCAA TCCCAAATTC ACGGAGCTTT CGGGATATTC CTTCGACGAA
GCCCGGGGAC AGAATCCCCG CATTCTCGGT TCGGGCTACA AATCGCGCGA AGAGTATCAG
GATCTCTGGC GCACGATCGA ATCCGGCCGG CAGTGGCGGG GCGAGTTTCG CAACCGCCAC
AAGGACGGCA GCCTGTACTG GGAATCCGCC CTCATCGCGC CCATCCTCGA CCCTGATGGG
CGGACCACCC ATTATGTAGC CATCAAGGAG GACATCACCA AACGCCGCCA CACGGAAGAG
GAGCTGCGCA AGCGCGACAT CAACTTCAAG AAGATCGTCG ACATCCTGCC GCAACTGGTC
TCGTATATTG ATAAGGATCT GCGCTACCGC TTTGTCAACG CCACGTATTC CAGTTTTTTC
TCGCCCGGGA ACCTTATCGG CAACACCGTC GCGGAGGTCA TCGGCGAAAA GGCTTTCGAG
GCCACACGGG GGCATATCGA ACAGGTTTTT CAGGGCAAGA CCGTGCATTA CGGGGCCACT
TTGACGTATC CGGAAATGGG CGAACGCTTT GTCGATGTCT ATCTCATTCC CGATTATTCG
AGTCATGGTG TCGTGGATGG CTATTACGCG ATTCTGAACG ACCTGACCCA TTTGAAGAGA
ATCGAGGATT CCCTGCGCCT GGCCAAGGAC GAGGCGGAGG CCGCGAACAA GCTCAAGTCC
GAATTTCTGG CCAACATGAG CCACGAAATC CGCACGCCAT TGAACGGCAT CCTCGGCATG
CTGCAGCTCA TGCAGGGCTC GAACCTGGAC GCGGAGCAAC AAGAATGCCT GCACACGGCC
ATCAAATCAT CGGAACGCCT GACCCGCCTC CTGAGCGACA TTCTCGACAT TTCAAAGATC
GAGGCGGACA GACTGATTTT CCGGGAGCAT GCCTTCGACA TCATGGATGT CGAAAAGGCG
CTCACGGAAT TGTTCGGCCA GGCAGTAAAG GAAGCAGGCA TCGCCTACGA CTTCAGAGTG
GACCCCGGCC TGCCGAAACA GGTCCTGGGC GACGAGGCGC GGCTGGTGCA GATACTTTTC
AATCTGGTCG GCAACTCCCT CAAATTCGCT GACAAAGGCT ACGTAAGCGT CGATATCACG
CCCCTTCCGT TCACGGCGGG CGCGCCGCTG CGACTGCTTT TTTGCGTCAC CGACTCGGGC
CTTGGCATGT CGGAGCAAAC CCAGCGCGAC ATCTTCGAAC CTTTCATCCA AAGCGACGGC
TCCTACACCA GACGCCATCA GGGAGTGGGG CTGGGGCTGA CCATCGTGCG CAAACTCGTG
CAACGCATGG GCGGTAGCCT CTGTCTGGAT TCAGTCTCCG GGCAGGGCAC GGCGGTGTAT
GTTTCCCTGC CGTTTGGGCT GCCGCCTGAT CGCAGCGGGG AAGATCCCAC ATCCTGCGGA
CACTGCGATG GAGTGCCGGG CCTGCGCCTG CTCATGGTCG AGGACGATGC GGTCAATCTG
CTTTGCGGAC AGCGCCTGCT GGAAAAATCA GGGTATGTGG TCACAACGGC CCGTGATGGC
CAGGAGGCCC TTGAAGTACT CATGGTCCAT GATTTCGATC TGGTGCTGAT GGACATTCAG
ATGCCGGTAC TGGACGGAAT CCAGACCACC CGGGCCATCC GCCATGCCGC GCCATTCGCG
CACGTATCAA CGATCCCCAT TATCGCCCTG ACCGCTCACG CCATGGCCGG GGATCAGGAA
AAATTTCTGG CTGCGGAAAT GGATGGATAC CTGAGCAAAC CTTTTGACAT TTGTAAAATC
AACCAGGAGA TCGCCAGGGT CGTGTCCCTG CCCCGCAGGG GAGCGCGCCA GGCGGATTGA
 
Protein sequence
MTKTMPLKNN GDLRFEDFFD LREVQIIQDS FAMATGVASL ITSPEGLPLT RPSNFTRLCS 
QVIRGSRAGN ENCMRSDALL GAYNPSGPNV SRCMSGGLWD AGVSITVGGR HVANWLIGQV
RSSLADEEAM LGYAKTIGAD PQEYREAMKE VPFMEEAQFR RVADALFVIA NSLSEKAYQQ
TMLLEEKRER QKMDAMREML MDRSLDAIVV VDQNHRIIEA NRRFADMLGY TPAEVLGLRT
WDYEANMTEG MIKELFSDFS QVNSVFETRH RRKDGSIFDV EVTTAGASID GRSCVLAFSR
DITTRKEAER QLRQSEKHFR ALFELSRDGF ILADAEGRFL DANKAYCDMT GYSLPELRAL
GDFYALTPEK WHDWQRDEIW TRLFKSGDTG VYRKEYIHKD GHVFPVELRD FAVHDDHGVV
RYAWGIVRDI SERVRTEERM RSLMQMVEQS PACIVMTDPQ GNIEYVNPKF TELSGYSFDE
ARGQNPRILG SGYKSREEYQ DLWRTIESGR QWRGEFRNRH KDGSLYWESA LIAPILDPDG
RTTHYVAIKE DITKRRHTEE ELRKRDINFK KIVDILPQLV SYIDKDLRYR FVNATYSSFF
SPGNLIGNTV AEVIGEKAFE ATRGHIEQVF QGKTVHYGAT LTYPEMGERF VDVYLIPDYS
SHGVVDGYYA ILNDLTHLKR IEDSLRLAKD EAEAANKLKS EFLANMSHEI RTPLNGILGM
LQLMQGSNLD AEQQECLHTA IKSSERLTRL LSDILDISKI EADRLIFREH AFDIMDVEKA
LTELFGQAVK EAGIAYDFRV DPGLPKQVLG DEARLVQILF NLVGNSLKFA DKGYVSVDIT
PLPFTAGAPL RLLFCVTDSG LGMSEQTQRD IFEPFIQSDG SYTRRHQGVG LGLTIVRKLV
QRMGGSLCLD SVSGQGTAVY VSLPFGLPPD RSGEDPTSCG HCDGVPGLRL LMVEDDAVNL
LCGQRLLEKS GYVVTTARDG QEALEVLMVH DFDLVLMDIQ MPVLDGIQTT RAIRHAAPFA
HVSTIPIIAL TAHAMAGDQE KFLAAEMDGY LSKPFDICKI NQEIARVVSL PRRGARQAD