Gene Dbac_1424 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_1424 
Symbol 
ID8377089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp1602631 
End bp1605783 
Gene Length3153 bp 
Protein Length1050 aa 
Translation table11 
GC content56% 
IMG OID645000648 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_003157934 
Protein GI256829206 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.4662 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAGTT TACGTTTGAC CGACAGCGCA ATCCCGCAGG TGGTGCGGTG CGGTGCGCGG 
CAGTTCCTCC CCCTCTTGCT GCTCTGTCTG TTTCCGCTCT CTGCCTTGGC AGAAGGGGAG
CGGGTGCTTT TTATCAGTTC CTATCATCCA GGTTTTCCGA CCTTTTTTCA ACAAACCGAG
GGGCTGCGTA CGGAATTGGA ACCGGCGGGC ATCACCCTTG ACGTCGAATT CATGGACACC
AAGCGTTTTT CCGGAACCGA GTATGAGGCG CTCTTTTTGG AACATCTGCG CTTTAAGCTG
AAAAAAGTCC CTGCCTACGA CGCTTTCGTC GTTGCCGATG ACGCTGCATT GCATTTCGCC
TTGGATAACC GTCAGGAGCT CTTCGCAGGG AGACCCGTGA TTTTTTGCGG CGTCAACAAT
CAGGACCTGG CCCACGCATT GAGCGGTACT CCAGGCATCA CCGGCGTCAT CGAATCCATT
TCAATACGTG AGACTCTTGA AGCCATGTGG CGCTTGAGGC CCGGGTTGAA AACGGTCTAC
GCGCTGGTCG ACGGGGAGCC TGGCGGTCAG GGCGACCTGC GCACCTATCT GGCGCAGCGT
GAGTTTTTTT CCGAAAAAAG CCTCCAGGTT CTGGGCCTTG ACACCATGAC CTGGAACGAA
CTTAGGGACA GACTTTCCGC TCTGCGGCAG GATGAAGCCG TCCTGCTGCT TTCCGCATAT
CGTGACCGTG ACCTTATAAC CAGGTCCTTT GAAGATGCTT TGAAATTCAT TCTGGCTCAC
ACGCGCGTGC CGGTGCTGCA TCTCTGGGAA CATGGTCTAG GCCAGGGAAT CTTCGGAGGC
AGGATCATCT CGCACACGGA GCAAGGGCGC ATCGCTGGCC AGTTGACCCT GAAAATACTG
GCGGGAACGC CTGCTCATTC AATACCTGTG GTCGAAGGCA GCGAGGCCAA CCGTTATGTT
TTTGACCATG CGGTCCTGAC CCGCTTCGGC ATCAAGGAAT TCCAGCTGCC TTCGAGCAGC
GAAGTCCGGG GCAAGCCTTT CTCCATCCTT TCCCAATACG GTACGGAAAT TTTTGTCGCG
GTCGTGTTCC TGGTTACGCT GATAGCCCTT GTAGTGACCC TGATCAGTCA CATATATCGA
TTGCGCAGGG CACAGGTTCA GATCACGGAC AGCGAGAAAC GCTACAAAGC CCTCTTCGAT
GCCAACTCCG ATGGAATTCT GGCCGCCGAC AGCGTGACTC GACGTTTTGT TTTCGCCAAC
CCCGCCGTGT GCCGAATGTT CGGCTACTCC GAAGAGGAGT TTCGCGGGTT GAAAGTAGAC
GATATCCATC CGCAGGAAAA TCTTGAAGAG GTTCTTGGCA ATTTCAACGC CCAGGCCCTC
GGGCAAACAG ACGTTGCGGA GGCGCTGCCC TGCCTGCACC GGGATGGGAG TGTTTTCACG
GCCGACATCC GCAGTTTTTT GCTCAAGATC AATGGAACGT CCTGCGCCGT GGGCCTTTTC
CGGGACGTGA CCGAGCGCAG CCAGATCCTT GATGCCTTGC GTCAGACTCA GGAGCGTCTG
GCACTGGCCA TCGCCGGCAG CAATGACGGC ATCTGGGATT GGGACCGGGT TGCCGACCAG
GTCTATTTTT CCCCGCGCTG GAAGGAGATC ATCGGCTACG AGGATCACGA ACTGCGCAAC
GACCTGGAGG AATGGCGAAG CAGGATTCAT CCCGAGGACA GGGAGCGGGT GCTGGCCGTG
AACAACCAGT TTTTCAGCAG CGATGCGTCC CACTTCGTCA TTGAATACAG GCTGCGCCAC
AAGGACGGAA CCTACCGCTG GATCATGGGG CGAGGCACCT GCCTGCGCGA CGATGAAGGC
GTGCCATGCC GCATGGCCGG TTCGCACGCG GACATCACCG AACGCAAGGC CATGGAACTC
GAACTTGTGG GCGTACGCGA CGCTGCCCTG GCTGCAAGCG TCGCCAAGAG CGCCTTTCTG
GCCAACATGA GCCACGAGAT CCGCACGCCG TTGAACGGGA TAATGGGCAT GCTGCAGTTG
CTTGACTCCT CATCCCTGAC CGAAGAGCAA AAAAACTACG TGCGCATGGC CGATGTTTCG
GGCCGGCGTC TGACAGCACT TTTGTCAGAC ATTCTGGACA TCTCCCGGAT CGAAGCTGGT
AAGTTGTTGT TGACGGAACG CGCTTTTGAC CTTGAAGAGA TGCGGACTTC CATTATAACT
CTTTTTTCAA TCCCCGCGCA GGAGAAAGGC ATAAGCCTTG TCGTTGAGCT GGCTCCTGAT
CTTCCTCCAA GGTTGATCGG GGATGATCTG CGGCTGCGGC AGATTCTTTT CAACCTGGTT
GGAAACGCAG TCAAATTTAC CAATGAAGGT TTCGTGCAAA CGCAGATAAG TTTGCTGTCC
AGCCAGGCCG ACAACGGATG CCGACTTCTG TTTTCTGTCC AAGACAGCGG TGAGGGCATC
AGCGACACGC TCTTGCCCGC CATTTTCGAG CCTTTCGTGC AGGGCGAGGG GTCCTATGTG
CGCTACCACC AGGGGGCGGG ACTTGGCCTG GCCATTGTCG GACGTCTCAT GCGCATGATG
GGCGGGTCGC TGGCCATCGA CAGTTCGGAC AGCGGCACGA CGATATGTTT TTCCCTGAAC
TTCAGGATCC CGGAAGCACC GGCAAAAACA ATCGTCGAAT GCGAACATTC TGAAAAGACA
GGGCACGGGA ATCTGCGTAT TCTGCTCGCT GAGGACGATC CGGTGAACAT GTTCGCCGCG
CGGCGCATTC TGGGCAAGGC GGGACATGCG GTCACCCCGG CCACGAACGG TGGGCAGGCT
GTCGAATTGC TGCGGGAGTC GGAGTTTGAC CTTATCCTCA TGGATGTGCA GATGCCGGTC
ATGGACGGTT TGGAAGCCAC GGCAATGATT CGTGGCGATG CAACCCTGGG TGAAAAATCC
CGCATCCCCA TCGTGGCCAT GACCGCCTAC GCCATGAGCG GCGACCGGGA GAAATTCCTG
GCCGGAAGCA TGGATGGCTA TATCGCCAAG CCTCTGAGTT GCGAGACTCT TTACGAAATC
ATTTCCAATG TCATTGCCCG AAAAAATATC GAACCGGAGC CATGTGCACG AGGTGTTTCG
AACGAAAAAG GCACCCTGGA ATCTAATCCT TAG
 
Protein sequence
MKSLRLTDSA IPQVVRCGAR QFLPLLLLCL FPLSALAEGE RVLFISSYHP GFPTFFQQTE 
GLRTELEPAG ITLDVEFMDT KRFSGTEYEA LFLEHLRFKL KKVPAYDAFV VADDAALHFA
LDNRQELFAG RPVIFCGVNN QDLAHALSGT PGITGVIESI SIRETLEAMW RLRPGLKTVY
ALVDGEPGGQ GDLRTYLAQR EFFSEKSLQV LGLDTMTWNE LRDRLSALRQ DEAVLLLSAY
RDRDLITRSF EDALKFILAH TRVPVLHLWE HGLGQGIFGG RIISHTEQGR IAGQLTLKIL
AGTPAHSIPV VEGSEANRYV FDHAVLTRFG IKEFQLPSSS EVRGKPFSIL SQYGTEIFVA
VVFLVTLIAL VVTLISHIYR LRRAQVQITD SEKRYKALFD ANSDGILAAD SVTRRFVFAN
PAVCRMFGYS EEEFRGLKVD DIHPQENLEE VLGNFNAQAL GQTDVAEALP CLHRDGSVFT
ADIRSFLLKI NGTSCAVGLF RDVTERSQIL DALRQTQERL ALAIAGSNDG IWDWDRVADQ
VYFSPRWKEI IGYEDHELRN DLEEWRSRIH PEDRERVLAV NNQFFSSDAS HFVIEYRLRH
KDGTYRWIMG RGTCLRDDEG VPCRMAGSHA DITERKAMEL ELVGVRDAAL AASVAKSAFL
ANMSHEIRTP LNGIMGMLQL LDSSSLTEEQ KNYVRMADVS GRRLTALLSD ILDISRIEAG
KLLLTERAFD LEEMRTSIIT LFSIPAQEKG ISLVVELAPD LPPRLIGDDL RLRQILFNLV
GNAVKFTNEG FVQTQISLLS SQADNGCRLL FSVQDSGEGI SDTLLPAIFE PFVQGEGSYV
RYHQGAGLGL AIVGRLMRMM GGSLAIDSSD SGTTICFSLN FRIPEAPAKT IVECEHSEKT
GHGNLRILLA EDDPVNMFAA RRILGKAGHA VTPATNGGQA VELLRESEFD LILMDVQMPV
MDGLEATAMI RGDATLGEKS RIPIVAMTAY AMSGDREKFL AGSMDGYIAK PLSCETLYEI
ISNVIARKNI EPEPCARGVS NEKGTLESNP