| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1409 |
|---|
| Symbol | |
|---|
| ID | 8377074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | + |
|---|
| Start bp | 1579292 |
|---|
| End bp | 1581628 |
|---|
| Gene Length | 2337 bp |
|---|
| Protein Length | 778 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645000635 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_003157921 |
|---|
| Protein GI | 256829193 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCCTG ATCATTCCAT AAGCCCCCCC TCGCGACTGT CCGGATTTCA GGATGTGGAC
GATCTGCTGC TGAGCGCTCC CATCGGCGTG TTCTCATCCA CTCCCGAAGG GCGGTATCTG
TACGTAAACC CAGCCTGGGT CAGAATTTTC GGCTACGATT CGCCAGAGGA CGTCCTTGTC
TCCATTACCG ACATCGGCAC GCAGGTTTAT GTCGATCCGG CCCAAAGGGA GGAATTCAAG
CGTGTGCTTG AAGCCCACGG CGAAGTCGTC AACTTTGAAA GCAAATTTAA GCGGCGGGAT
GGATCCATTG TCTGGGTGTC CAGAAACGCC AGGGCAGTAC GCGACGCGCA GGGCAGAATC
TCCCATTACC AAGGCTTCAC CACGGACATT ACCGAGCGCA AGCAATCCGA AGCAGCCTTG
CAAAAACAAA AGGCAATGCT CGAGCATTTG TTCGACAGCT CGCCGGAGGC CATTGCCATT
GTTGATAACC AGGGTTTCGT TTTGCAGATC AACAAGTCTT TCACCTATCT TTTCGGATAC
GAATGGGAAG ATGCGCACGG CAAGCAGATA AACGATCTCG TTTCCCAGGG CATGTACCGT
GACGAAGCGG GACACTATTC GGATCTCGTT TTTAAAAATG GAACGATCGT CGAGACGGAA
ACAGTGCGTT GCACAAAAGA CGGCACGCCT CTCGATGTTG TGCTCATCGG GTACCCCATC
CTCATCGACG GACGCATCAT CGGCGCCTAC GCCATTTATC GCGACATAAC AGATCGCAAG
CTCGCCGAGA AATCGCTCCA GGAAAGCGAA GAGCGCTTCA AGGCCCTGCA CAATGCCTCT
TTCGGCGGCA TAACAATCCA CGACAAGGGG ATCATTCTCG ATTGCAATCA GGGGTTGTCC
GGCATCACCG GCTACTCCGT GAATGAATTG ATCGGCATGG ACGGCCTGCT GCTCATCGCT
GAAAAGTCGC GGAAAATGGT CATGAAGAAC ATTCTGGCCG GGTACGAAAA GCCCTACGAA
GCGGTCGGCC TGCGCAAGAA CGGTCAGGAA TACCCGCTGC GCCTGGAAGC CCGAAACATA
CCGTACAAGG GCCGCATGGT CCGATCCGTC GAATTCCGGG ACGACACAGA GCGAAAACTG
GTCGAAGCAG AGCTGATCAA GGCCAGGGAC GCGGCCCAGG CGGCCAACCA GGCCAAGTCT
GAATTTTTGG CCAACATGAG CCACGAAATC CGCACCCCTT TGAACGGCGT CATGGGTCTC
ATGCAACTGC TGCAAACCAC GCTCCTGGAC GACGAGCAGC GCGAAATCGT TTCCATGGCC
ATCAGGTCTT CAGACCGTCT GGCCCGTCTG CTGACAGATC TTCTCGACAT CTCGAAGATC
GAGGCGGGCA AGATGGATGT CGTCGAAGAG GATTTCAGCC TGCGTGAGCT GTGCGATTCC
GTAACCGAAC TTTTCGCCGT CAACGCCGAC AAAAAAAATG TCTCCCTGGA GTATGTCATC
GACCCCGACC TGCCGCCGAT TCTTATCGGC GGTGTCGCCA GGTTGCGGCA GATTCTTTTC
AACCTGGTCG GCAACTCCCT TAAATTCACC GATCAAGGCA GGGTGCGGCT GGAGATGGCT
CCCATCGCTC CTGCCAAAAA CGGCGAACTG CGGCTTCTTT TTTCCGTTTA CGACACGGGA
ATCGGCATCC CCGAGGATAA ACTGAGGGAT CTGTTCAAGC CTTTCGCGCA GGTGGAAGGA
TCCTACACGC GCAAATACCA AGGTGCGGGC CTCGGACTGG CCATAGTGCG GCGTCTGGTG
GAGCTTATGC GAGGGCACAT TTATATGGAA AGCGTTCTGG GCAAAGGGAC CGCGGTGCAT
GTGGTCCTCC CGTTCAAGTC ACTGCAGGAG CTGCCCCCGG CAAGGATGAG GGAAAAGGCA
GATATAACCG GTCGTAAAAC CATGCACGTT CTGATGGTCG AAGATGATCC GTCCAACCAG
GTCGCCACCC GCAAATTGCT GGAAAAATCC GGCCATGCGG TAACCCTGGC CGAAAATGGC
CAGGAGGCTC TTGATCTCTT GCGCACAGGA GATTTCGACA TCGTGCTCAT GGATATTCAG
ATGCCGGTCA TGGGAGGCCA GGAGGCCACC AAGGAAATCC GCAACTCTCC CGGCCTAGCC
GCCTGCAAGA GCATCCCTGT CATCGCACTG ACCGCGTACG CCATGACCGG GGACCGGGAA
AAATTTCTCG CCTCGGGAAT GGACGACTAT CTGGTCAAGC CGGTCAGCCT GGAGAACCTG
CAGCGAATGA TCGAAAAACA TGCTCCCCGT GCCGGGAGTC GAAACATGCA TCCCTGA
|
|---|
| Protein sequence | MAPDHSISPP SRLSGFQDVD DLLLSAPIGV FSSTPEGRYL YVNPAWVRIF GYDSPEDVLV
SITDIGTQVY VDPAQREEFK RVLEAHGEVV NFESKFKRRD GSIVWVSRNA RAVRDAQGRI
SHYQGFTTDI TERKQSEAAL QKQKAMLEHL FDSSPEAIAI VDNQGFVLQI NKSFTYLFGY
EWEDAHGKQI NDLVSQGMYR DEAGHYSDLV FKNGTIVETE TVRCTKDGTP LDVVLIGYPI
LIDGRIIGAY AIYRDITDRK LAEKSLQESE ERFKALHNAS FGGITIHDKG IILDCNQGLS
GITGYSVNEL IGMDGLLLIA EKSRKMVMKN ILAGYEKPYE AVGLRKNGQE YPLRLEARNI
PYKGRMVRSV EFRDDTERKL VEAELIKARD AAQAANQAKS EFLANMSHEI RTPLNGVMGL
MQLLQTTLLD DEQREIVSMA IRSSDRLARL LTDLLDISKI EAGKMDVVEE DFSLRELCDS
VTELFAVNAD KKNVSLEYVI DPDLPPILIG GVARLRQILF NLVGNSLKFT DQGRVRLEMA
PIAPAKNGEL RLLFSVYDTG IGIPEDKLRD LFKPFAQVEG SYTRKYQGAG LGLAIVRRLV
ELMRGHIYME SVLGKGTAVH VVLPFKSLQE LPPARMREKA DITGRKTMHV LMVEDDPSNQ
VATRKLLEKS GHAVTLAENG QEALDLLRTG DFDIVLMDIQ MPVMGGQEAT KEIRNSPGLA
ACKSIPVIAL TAYAMTGDRE KFLASGMDDY LVKPVSLENL QRMIEKHAPR AGSRNMHP
|
|---|
| |