Gene Dbac_1221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDbac_1221 
Symbol 
ID8376885 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfomicrobium baculatum DSM 4028 
KingdomBacteria 
Replicon accessionNC_013173 
Strand
Start bp1347995 
End bp1351129 
Gene Length3135 bp 
Protein Length1044 aa 
Translation table11 
GC content58% 
IMG OID645000453 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_003157740 
Protein GI256829012 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.227424 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTGCAG ATGACCAACC CGCCCCCCAT GACATTTCGC GTACCCTGCT CCACGTCACC 
CTGTGGACAT TTCTCCTGGT CGTGCTTTTC TCCATCAGCC GTCACAATTT CCTCCTTTTT
CACACTCTGG CCGAACTCTT CTCCGTGGCT GTGGGCTGGA GCGTTTTGCT GCTGGTCTGG
AACACGCGCG CCTTTCTGCG CAACGATGCC CTTCTGTTCC TGGGCATCGC CTACTTTTTC
ATCGCCCTGC TCGACCTGAC TCACACCCTG GCCTACAGTG GAATGAACAT CTTCGCGTCC
GTAAAGGACG CAAACCCGGC CACGCAACTC TGGATCGCGG CCCGAGGGCT GGAAGCGGCC
AGTCTCTTTG CCTACAGCCT GATGCTGGGA CGCGGTTTTT CCCTGTGGTC GTTGCTCGCG
GTCCTCTCCG CCATAACGTC GGCCTTGTTG CTGAGCATCT TCGTCTGGGA TATTTTTCCG
GTCTGCCACA TTGAAGGGGT GGGACTGACG ACGTTCAAGA TCGCCGCCGA ATACGCCGTC
AGCGCTGTAC TGGCGGTGAC CATGCTCAAT CTGACACTGC AGCGAGACAA ACTCGAACCC
GGCATCTACC ACCTGCTGAT CATTTCCATA GCCCTGAGCA TCGTGGGCGA ATCGGCCTTC
ACGTTCTACG TAAATGTGTA CGGCCTCTCC AATGTTATCG GTCATTTTCT GAAGATCGTA
TCCTTTTTCC TGATCTATCT GGCCCTGGTC CGTTTCGCCT TGAAACGCCC CTATCAGACC
CTTTTCAGGC AACTTGCCCA GGAACGCGAA GCCTTGGCGC GTTCGGAAGA AAAATGGCGG
AACATTCTGG TACACACGCC GCAGATCGGC ATCTCCCTCG ACCCCAAGGG ACGAATCGTC
TTCGCCAACG AATATTTTCT CAAGCTGACC GGATGGGAGC AGGAAGAGGT GCTGGGTCGG
GACTGGTTTG AAGTGTGCAT TCCTGTCGAG ATCCGCGAGT CGACCCGCGA ATTTTTCGAT
TCCGTCATGG CGGGTGGACA AAGCCTGGCC TACTCCACGC ATGAAAATGA GATCATAGGC
AAAAACGGCG CCCGCCACAC CATCGGCTGG GCCAACGCGG TGGCCTTCGA TTCATCGGGC
CTGCCCACGG ACGTGACCAG CCTCGGCGTC GATCTGACGG AACGCAAACA CGCGGCAGAG
GTGCTGGTCG AGAGCAGAAA TCTATACCAG TCTCTGGTGG ACAACCTGCC GCTTTCGATC
ATGACCTTTG ATCGCGATGG AAAAATCAAT TACATCAACC AGTTTCACAT TGACAGTTTT
GCCAAAGGCC GTCTGGATAA AGAATATTTT CTGGGCCGGG CCCTGCATGA ACTACCCGGT
CTGGTCTCCG CGGGGATCGG TCCTGAGCTG AAAGAGGTGC TTCAGGGCCG CCCCGTAAGC
CTGCCAAGCC TTTTCATCCC CCGCCTCGCC GCCGGCGGTT CGGCCTGGCA AAGCGTCAAG
GCCATCCCCC TGTTCAAGGA CGGCATCTTC TCCGGCGGCA TCCTCATGCG CGAAGACATC
ACCGCCCGCA AAATGTCCGA GGAGGCCGTG CGCCAGAGCG AAGAGCGGCT GGCCCTGGCC
CTGGAGGTCA CCAACGACGG GCTCTGGGAT TGGGATTGCG TATCGGGCAG CACATATTTC
AGCCCCCACT ACTATGCCAT GCTCGGCTAC GAACCCGGGG AGTTCGAAGC GAACTACGCT
ACATGGCGAA GTCTTATCCA TCCCGACGAT GTGCTTGCTG TCGAAGACGA AGTAAGCCGC
CATGTCGCCA GCGGGCAGGT TTTCGAGATC GAATTTCGCA TGAAATCCAA ATCCGGACAA
TGGCAGTGGA TCATGGCGCG TGGCCGGGTG GTTGAAAAAG ACGAACAGGA CCATGCCGTG
CGCATGGTGG GCACGCATGT GGACGTGACC GAGCGGAAGA ACGCGGAATA TGTCGCGCTA
CGCGCCAAGG AGGCCGCCGA GGCGGCAAAC AGGGCCAAGA GCGAATTTCT GGCCAACATG
AGCCACGAGA TACGCACCCC GTTGAACGGC ATCATGGGTA TGCTGCAGCT CCTGCAGACC
ACAAGTCTGA ATCATGAACA GCTCGAATAC AGCTCCATGG CCGTGCAATC GACCTCCCGC
CTGACCAGCC TGCTTTCCGA CATTCTCGAC CTCTCCCGGG TGGAAGCAGG CAAGATGCCC
ATTCGGCCCG AAGTCTTCGA CCTGCGCAAA AAACTCCATC AATCCATCGA TCTCTTCGCG
TCCATCGCCC TGCAGTCTGG TGTCGAGCTG CGGCATCATT TCGACGACAC ACTGCCGCAA
CACGTCATCG GCGACCCTCT CCGCCTGCAA CAGGTGCTCA CGAACCTGAT CGGCAATGCC
TTCAAGTTCA CAGAGCGCGG CTTCGTCAGC GTGGAGGCCT ACCCTTTGCC GGCCCGTAAC
GAAAACCAGC TGCGCATATT CTTCGAGGTT TCGGATTCGG GGTGCGGCAT CCCCGATGAA
GCGCTGGGCC TGCTCTTCGA GCCTTTCAGC CAGGTAAGCC AAGGCTACAC CAGACAATAC
CAAGGCGCGG GCCTTGGCCT GTCCATCTGC AAGCGCCTGG TCGGGCTGAT GGGCGGCAAC
ATGGCCATTT CAAGCGAGGT CGGCGTGGGA ACAAGCATCT ATTTCTGCGT CACCCTGGAC
AAGGCACTTA AACTGCCGGC CCAGGATTCT TCAGCTCAGA CGAAAACAGC GCTGAGGCCG
AGGAAAATAC TCGTGGCCGA AGACGATGAG GTGAACCTTT TCGCCGTCCG CAATCTGCTG
ACTAAAAACG GCCACGAGGT CGTCACCGCC CATAACGGGC ATGAGGTGCT GGAGCGCATC
ATGGAGCAGG ATTTCGACCT CGTCCTGATG GATATTCAGA TGCCGGAAAT GGACGGAATC
GAGGCCACCA GGCGCATCCG CGTCACTGAG CAGGCCACCG GCAAAAAACC AGTGCCGATC
ATCGCCATGA CCGCCTACGC CATGAACGGA GACAGGGAGA AGCTGCTGGA CAAGGGCGTG
GACGGCTATG TGTCCAAACC CTTCAGCATC AAAACGCTCA TGGAAGTGAT AAAGGAAAAC
GCCAACATAG GCTGA
 
Protein sequence
MLADDQPAPH DISRTLLHVT LWTFLLVVLF SISRHNFLLF HTLAELFSVA VGWSVLLLVW 
NTRAFLRNDA LLFLGIAYFF IALLDLTHTL AYSGMNIFAS VKDANPATQL WIAARGLEAA
SLFAYSLMLG RGFSLWSLLA VLSAITSALL LSIFVWDIFP VCHIEGVGLT TFKIAAEYAV
SAVLAVTMLN LTLQRDKLEP GIYHLLIISI ALSIVGESAF TFYVNVYGLS NVIGHFLKIV
SFFLIYLALV RFALKRPYQT LFRQLAQERE ALARSEEKWR NILVHTPQIG ISLDPKGRIV
FANEYFLKLT GWEQEEVLGR DWFEVCIPVE IRESTREFFD SVMAGGQSLA YSTHENEIIG
KNGARHTIGW ANAVAFDSSG LPTDVTSLGV DLTERKHAAE VLVESRNLYQ SLVDNLPLSI
MTFDRDGKIN YINQFHIDSF AKGRLDKEYF LGRALHELPG LVSAGIGPEL KEVLQGRPVS
LPSLFIPRLA AGGSAWQSVK AIPLFKDGIF SGGILMREDI TARKMSEEAV RQSEERLALA
LEVTNDGLWD WDCVSGSTYF SPHYYAMLGY EPGEFEANYA TWRSLIHPDD VLAVEDEVSR
HVASGQVFEI EFRMKSKSGQ WQWIMARGRV VEKDEQDHAV RMVGTHVDVT ERKNAEYVAL
RAKEAAEAAN RAKSEFLANM SHEIRTPLNG IMGMLQLLQT TSLNHEQLEY SSMAVQSTSR
LTSLLSDILD LSRVEAGKMP IRPEVFDLRK KLHQSIDLFA SIALQSGVEL RHHFDDTLPQ
HVIGDPLRLQ QVLTNLIGNA FKFTERGFVS VEAYPLPARN ENQLRIFFEV SDSGCGIPDE
ALGLLFEPFS QVSQGYTRQY QGAGLGLSIC KRLVGLMGGN MAISSEVGVG TSIYFCVTLD
KALKLPAQDS SAQTKTALRP RKILVAEDDE VNLFAVRNLL TKNGHEVVTA HNGHEVLERI
MEQDFDLVLM DIQMPEMDGI EATRRIRVTE QATGKKPVPI IAMTAYAMNG DREKLLDKGV
DGYVSKPFSI KTLMEVIKEN ANIG