Gene Dbac_1153 details

Gene Information

• Locus tag: Dbac_1153
• ID: 8376817
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfomicrobium baculatum DSM 4028
• Kingdom: Bacteria
• Replicon accession: NC_013173
• Strand: -
• Start bp: 1262227
• End bp: 1265658
• Gene Length: 3432 bp
• Protein Length: 1143 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 645000386
• Product: PAS/PAC sensor hybrid histidine kinase
• Protein accession: YP_003157673
• Protein GI: 256828945
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.648529
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTTCATA ATGGCGTCGG CGGGAGATTG AGACTGTATC GTCAGCTGCG TGACATGACG 
CAGGAGAGTC TTTCCGAAGT CATCGGCGTT ACGAAGCAGC ACTTGGGCCA GATCGAACGC 
GGGCAGTGCA ATCCGTCGCT TGATTTTCTG TCCAAGGCCG CAGCAGCCTT GAACACCCAG 
GTCGCCAATT TTTTCCTCGG CAACAGCCAC GATCCAACTG TTTCCGGCTG CTCCACTTGT 
TCCGAAGACG CCGGGCGCAT CCAGCCCTTT GCCGGGTGCG GCCTGTGGAC AGTCTCGGGC 
CACGTCGGCA AAAACCTCTG GTCCAGATCC CTGTGCAGGA TGCTCGGCTA TGCGTCCGTA 
CGTGTTCCAT CCCTCGCCAA ATTCTCCAGA CACCTCGCCG CAAACGATGC CGGAACATTC 
CAGTCCTTTT TCGGGCAGGT GATCGAAGGC AGAACTCCGG ACCCCGTCAT CATCGACCTG 
ACCCGCAGGG ACGGAGTGCT CAGAAAGGTG CAGGCCCAGG CGGAAATCCT GAGCGCCGGC 
GACGGACTCA CGGACATCAG GTGCATCATC TTCTGGGATA TGACGGACTG GCTTGAAACC 
CATCGTCTTT TCCACCACAC GCAGCAGGAA CTGGGCGAAA CCATCGATGA CAGAACAGCG 
GCCCTGACCG CCGCGGTCTC GGATGCCAAG CGGGAACTGG AACTGCGTCA GGATACGGAA 
CGCGCATTGC AGCAGGCCCA CAATAATCTG AGCAGGCTGA TCCAAACCAT CCCGGTCATC 
GTCTATTCCC GGAGCCTCGA CGGCTCCACG GCCCATTACT GCTCACCACA GGCTCTTGAT 
GTCCTCGGAT ACAGCCCGGG GGAAACGGAC AAGGCAAAAG GTTTTTGGAC CGACCGTATC 
CACCCCGAAG ATGCTCCCGT GTACACGGAG GCGATGAAAC TGGCCTCACG CACGGGTTTC 
CTCGATGTCG AGTATCGCGT GCTGAGCGAG ACCGGAAAAG AGACATGGCT TCACGACAAG 
GCGGTCATGA CGGACAAGGG GGCGGGTCTT GTCATGCACG GGGTGGCCAC GGACATCACG 
GAGCAAAAAC GGGAGATCGA GACCAGAAAA GCCCTAGAGC GAAAGAGTCG GCAACTGGAC 
ACCATGCTGC GGCTGATCTG CGACAACGTA CCGGACATGA TCTGGGCCAA GGATATGCAA 
AAAAAGTATA TTTTCGCCAA CAAAGCTGTC TGCGAAACGT TGCTTATCGC CCGCGACACT 
GACGAACCCA TTGGCAGGAC GGACCTCTTC TTCGCGCAGC GGGAACGTGC CAGGCATCCG 
GATAATCCGG ATTGGCACAG CTTCGGCGAG ATCTGCCGCG ACACCGACCA GATCACCATC 
GACGCAGGAT GCCCGCAGCA GTTTGATGAA TACGGCAACG TCGGCGGAAA ATTCCTGTTT 
CTCGACGTGC GCAAGGCCCC GCTCTTCGAT GAAAGCGGAG TCAACATCGG AACCGTCGGG 
TCGGCCAGGG ACGTGACCGG GCAGAGGCGG ATGGAGAAGA AACTGGAGGC GGGCAACGTC 
GCCCTGCGCG CCATCCTCGA CAGCATCCCG GCCGACATCT GCGTGGTGGA CGTGGCCACG 
GACGAGATCC TTTTCATGAA CGCGTCCATG CGGGAAAATT CAGTGGAGAG CGGAACGGGC 
TTTCATCACC CCCGGCAGCA ATCCGACGGC GGTGAACCTC TTTGCCCCGG CAAAGCCCTA 
CAGGGCAATG AAATGGCTTC GTGGGAAGCC CTCGACCACT CCACCGGAAA ATGGAACCTG 
CATTTCGACA GGCCTGTGTC CTGGCTCGAC GGGCGTCCGG CCCGCATCCG CATCGCCATG 
GACATCACAG CGCGCAAGCA CGCTGAGCGT CTCATGGAGA AAGCCGTCGA CGAGCAGCGC 
ATCCTGCTCG ACTATATCCA GACGCAGATC TGGTACCTCA TCGACGAACA AACCTACGGG 
GCCGTGAACG AGGCGCACGC CGCCTTCAAC GGCCTCGGCA TTGGGGACAT GGCCTACCGG 
GACATCTACG AAATCTACCC GGTCGATGTG GCTGACGTCT GCCGCCAGGG GAACGAGGTT 
GTCTTTTCTT CGGGTCGCCC GGTGCGCACC GAGGAGTGGC TACCGCATTT CTCGGGTGAG 
AAAAGGTTCC TCTCCATCCT CAAATCTCCC AAACTCCGTG CTGACGGAAC GGTCGAGTAC 
GTGGTCTGTT CGGGGGAGGA CATCACCGAG CGCTGGAAGT CCGAAGAGGC TCTCAAGAAA 
GCCAAGGAAC AGGCCGAGGA GGCCAGCAGG GTCAAGTCCG GCTTCCTGGC CAGCATGAGC 
CACGAGATCC GTACGCCCAT CAACGGAATA ATGGGCATGC TCCAGTTGCT GCAGACCGCG 
GATCTTAATG CGGATCAGGC CTCGTTCGTG GACATGGCTG TGCGATCCTG CGACCGGTTG 
GTGCGCCTGC TCTCCGACAT CATGGATTTT TCGCGCATCG AGGCCGGCAA GCTCACCATC 
CAGTCCGCGC CGATGAGCCT GGAAAGCGTT TTCAGCCACG TCCGGGAACT GTTCACGCCT 
CTCAGCGGGA GCAACGGGGT CGTTCTCGAC TTCACTCTGG ACCCGGCCTT GCCCGACCGC 
ATCCTCGGCG ACGCATTTCG CTTGCAGCAG ATCCTCAACA ACCTGGTGGA CAACGCCTGC 
AAGTTCACCA CTTCCGGCCG CATAACCGTG CAGGCCTGGA ACCTGACTGC TGTTGAACCG 
CGAACCGTGC GGGTTTTTTT CGAGGTTTCG GATACGGGCA TCGGCATCCC CGACGAGGAT 
TTGCGGCGTC TTTTCGACCC GTTCATACAG CTCTGTGATG GATATGTCCG CAGTCACAAG 
GGCGTTGGGC TCGGCCTCTC CATTTGCAAG CGTCTGGTGG AGCTCATGGG TGGCGGCATG 
TCCGTGACCA GCGAGGCGGG AAAGGGCACG ACTTTCGCCT TTTCGCTGCG CTTTGAGACG 
GATTGTCCCC CTGCTCGCCC CGGCGGCTCC GATGAACGAA AAACCGCCAA TCTTGCGGAC 
AGGCGCGTTC TGCTGGTGGA GGACGACCAG GTCAGCGCCG TGGCCGGAGT GGCCCTGCTG 
GGCCGCCACG GAGCCGCAGT GGTCCACGTC CGCAGCGGCC AGGAGGCCCT GGACGCCCTG 
CGCAGGCAAC CCTTCGATCT TGTGGTCATG GATGTGCAGA TGCAGGACAT GGACGGCATC 
GAGGCCACCA TGCGCATCCG CGAGGGCGAA GCCGGAGAGA CGGTCAGGAA TATCCCCGTC 
ATCGCGTTGA CGGCCTGCGC CATGGCCGGC GACAGGGAAC GCTTTTTGGC AGCCGGCATG 
AACAGCTATG TAGCCAAGCC CATGGACATC CGCGAGATGC TCCGCGTCGC GGGACAGGCC 
ATGCGGAACT GA 

 

Protein sequence

MVHNGVGGRL RLYRQLRDMT QESLSEVIGV TKQHLGQIER GQCNPSLDFL SKAAAALNTQ 
VANFFLGNSH DPTVSGCSTC SEDAGRIQPF AGCGLWTVSG HVGKNLWSRS LCRMLGYASV 
RVPSLAKFSR HLAANDAGTF QSFFGQVIEG RTPDPVIIDL TRRDGVLRKV QAQAEILSAG 
DGLTDIRCII FWDMTDWLET HRLFHHTQQE LGETIDDRTA ALTAAVSDAK RELELRQDTE 
RALQQAHNNL SRLIQTIPVI VYSRSLDGST AHYCSPQALD VLGYSPGETD KAKGFWTDRI 
HPEDAPVYTE AMKLASRTGF LDVEYRVLSE TGKETWLHDK AVMTDKGAGL VMHGVATDIT 
EQKREIETRK ALERKSRQLD TMLRLICDNV PDMIWAKDMQ KKYIFANKAV CETLLIARDT 
DEPIGRTDLF FAQRERARHP DNPDWHSFGE ICRDTDQITI DAGCPQQFDE YGNVGGKFLF 
LDVRKAPLFD ESGVNIGTVG SARDVTGQRR MEKKLEAGNV ALRAILDSIP ADICVVDVAT 
DEILFMNASM RENSVESGTG FHHPRQQSDG GEPLCPGKAL QGNEMASWEA LDHSTGKWNL 
HFDRPVSWLD GRPARIRIAM DITARKHAER LMEKAVDEQR ILLDYIQTQI WYLIDEQTYG 
AVNEAHAAFN GLGIGDMAYR DIYEIYPVDV ADVCRQGNEV VFSSGRPVRT EEWLPHFSGE 
KRFLSILKSP KLRADGTVEY VVCSGEDITE RWKSEEALKK AKEQAEEASR VKSGFLASMS 
HEIRTPINGI MGMLQLLQTA DLNADQASFV DMAVRSCDRL VRLLSDIMDF SRIEAGKLTI 
QSAPMSLESV FSHVRELFTP LSGSNGVVLD FTLDPALPDR ILGDAFRLQQ ILNNLVDNAC 
KFTTSGRITV QAWNLTAVEP RTVRVFFEVS DTGIGIPDED LRRLFDPFIQ LCDGYVRSHK 
GVGLGLSICK RLVELMGGGM SVTSEAGKGT TFAFSLRFET DCPPARPGGS DERKTANLAD 
RRVLLVEDDQ VSAVAGVALL GRHGAAVVHV RSGQEALDAL RRQPFDLVVM DVQMQDMDGI 
EATMRIREGE AGETVRNIPV IALTACAMAG DRERFLAAGM NSYVAKPMDI REMLRVAGQA 
MRN