| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1092 |
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| Symbol | |
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| ID | 8376754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | + |
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| Start bp | 1199393 |
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| End bp | 1201336 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 645000327 |
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| Product | sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family |
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| Protein accession | YP_003157615 |
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| Protein GI | 256828887 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCGA CGATGCAAAG TTCATTTTAC GACTACCACA AGCGGATCTC CGAAATATCC
GCCAGAATGG TCAAGGCCTC GAAGGCGGAA CTCGATGACG AGATTCAGCG ATCACTCAAA
GAGGCATTGC AGCCGCTGGG CGTGGATCGC GGGGGGCTTC TCCAGGTTTT CGAGGATTCG
CCGATCGTTC ACATCGCGTA TGCTTGGTAT GATGACGGAT TGGAGCCGGT CTCAAAGGAC
ATCAATCTGG CGGAGAGATA TCCCTGGGCC TACCAGCACA TCGTTGTCCA GGGAAAGACC
TGGGCCATGT CATGCCTTGG GGATCTTCCG CCCGAAGCCG ATGTCGACCT GCGATCATAT
CGTCTGCTGG GATCCAAGTC GGTTCTGAGC ATCCCATTGT TCTTGGGCCA AAAAATCGAT
TATATCCTCA CGGTCAACGC CCTCAAAGAG GAACGGGACT GGCCCGAAGA GATTGTCGTG
TATCTGCGCC TGCTCGGAGA GATTTTTGTG AGCGCCTTGC AGCGGAGAGT TGACGACTAT
GCCCTGCTTG AGGCCAAGGA ACGTCTTTCC TTGGCGGTGG AATCCGCAGG AGCCGGCATT
TTGGATCTTG ATCTTGAAAG CGGCGTCTAC TGGACTACCG ACAGGGCCCG GGAGATACTC
GGCTTGGATT CCGGGCTGAG CGTCAAGTTC GAGAATACCC TGAAATTGAT TCATCCCGAC
GACAAGGCCA TGTTCCAGAA GGTCATGGGC GAAGTCATCA GCAAAAAAGG GCAGGGCAGC
ATCGAATACA GGATCGTGTT GCCGAACGGA CAAATCCGCT GGCTGCGAAG GTGGGTGCGT
TATCATGAGG GGTTCCCAGC GGGACGCCCC AGGCTTTTGG GGATCACCCT GGATGTGACT
GAGCGTCAAC AGATGGAGCT GAAACTCAGG GCGCAGCTTC AGGAAATCGA ACGCCTGCAC
GGCCAACTGG AGGAGGAAAA CTCCTACCTG CGCAACGAGG TGATGTCCTG TCGGGAGCGG
AAGAATCTGC ACAACTTCGG CGAACGGATG CAGGAGGTTT TGATCAAGGT CGAGCAGGTG
GCCAGTACTG AATGCACCGT TTTGATCGAA GGGGAAACCG GGACCGGCAA GGAAGTGCTC
GCGCAGGCAA TCCATCAGAG CAGCCCTCGG TCACATCGGA TGATGATCAC GGTCAATTGT
GCCGCTCTGC CCGCCGCCTT GGTGGAGAGC GAGCTTTTCG GACGCGAGAA GGGGGCGTTT
ACCGGAGCGC TAAGTCGGCA AGTGGGACGC TTTGAACTGG CTCAGGGCTC CACTCTGTTT
CTCGACGAGA TCGGAGAGAT GCCGCTTGAG ACGCAGGCCA AGCTGCTGCG GGTGCTCCAG
GAGGGGGAAT TCGAGCGCCT CGGGAGCCCA AAAACCATCA AGGTCGATGT ACGGGTCCTC
GCCGCCAGCA ACCGCGACCT GGCTGTGGAA GTTTCCCAGG GGCGCTTTCG CCGCGACCTC
TATTACCGTC TCAACGTCTT TCCCATTCTC CTGCCACCGT TGCGGGAACG CCGCGAAGAC
ATACCGCAGC TGGTTTGGGA GTTCATCAGC GAATTCGGGG ACCGGATGGG GAAAAAAATC
CGCCGTATCG CCAAGAACGA CATGGAGCGT CTCAAGGTCC ATGCATGGCC CGGAAATATA
CGCGAACTGC GCAATGTCAT CGAACATGCC ATGATCGTCA CCAAAGGGGA TACGCTAGAG
CTTGCGCACT TGCTGGTGAA CGCTCCTCAA GATGAGCCGG TTGTGACTCT CGAAGAGATG
GAGCGCCGGC ATATCCAGAG GATTCTCAAG GTCGCCGGAA ACCGGGTCAG GGGTTCGGGC
GGTGCTGCGG AGCTGCTGGC CATCAACCCC TCGACCCTTA ATTCGCGGAT GCGCAAGCTC
GGCATCAAAG CCAGGCCTGT CTGA
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| Protein sequence | MKPTMQSSFY DYHKRISEIS ARMVKASKAE LDDEIQRSLK EALQPLGVDR GGLLQVFEDS
PIVHIAYAWY DDGLEPVSKD INLAERYPWA YQHIVVQGKT WAMSCLGDLP PEADVDLRSY
RLLGSKSVLS IPLFLGQKID YILTVNALKE ERDWPEEIVV YLRLLGEIFV SALQRRVDDY
ALLEAKERLS LAVESAGAGI LDLDLESGVY WTTDRAREIL GLDSGLSVKF ENTLKLIHPD
DKAMFQKVMG EVISKKGQGS IEYRIVLPNG QIRWLRRWVR YHEGFPAGRP RLLGITLDVT
ERQQMELKLR AQLQEIERLH GQLEEENSYL RNEVMSCRER KNLHNFGERM QEVLIKVEQV
ASTECTVLIE GETGTGKEVL AQAIHQSSPR SHRMMITVNC AALPAALVES ELFGREKGAF
TGALSRQVGR FELAQGSTLF LDEIGEMPLE TQAKLLRVLQ EGEFERLGSP KTIKVDVRVL
AASNRDLAVE VSQGRFRRDL YYRLNVFPIL LPPLRERRED IPQLVWEFIS EFGDRMGKKI
RRIAKNDMER LKVHAWPGNI RELRNVIEHA MIVTKGDTLE LAHLLVNAPQ DEPVVTLEEM
ERRHIQRILK VAGNRVRGSG GAAELLAINP STLNSRMRKL GIKARPV
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