| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_1076 |
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| Symbol | |
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| ID | 8376738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | + |
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| Start bp | 1180773 |
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| End bp | 1182698 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 645000312 |
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| Product | sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family |
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| Protein accession | YP_003157600 |
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| Protein GI | 256828872 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000748726 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGATA TCTTCAATCT GCAAAAACTG ACATCCGCAA TATCGGCCTC CATGGTCATG
GCTTCATCGG AGAGCCTTGA CGGCGTGATC AATCGTGCTC TTGATAGTAT GCTCTCTTTC
CTTGAGATCG CCCGCATTGG GTTGCTTGCG GTCGATGAAA GCAGCCCGGT GATTAATGTC
GATTATGCGA GTTATGCCAA AGACGCTCCC CATGTTTCGA AACAGATCAA CCTGGCGGCC
TTGTTTCCAT GGACCTACGA TCTGGTCATC GGCAGAGGGC AAACCATGGT CATGGCCAGC
CTGGACGACC TGCCGTCCGA AGCCGAGGAA GATCGGCGGT CGCACACGAT GCTTGGCAAC
AAATCCGCCT TGATTATCCC TCTTTTCATC GGTTCCAGGG TGCATCACCT GCTGACTCTG
GACGCCCGCA AGACAGAGCG CGACTGGCCC GAGGAGGTCG TCGTCCAGGG CCGGCTGCTG
GGCGAAATTT TTGTCAGCGC CCTGCAACGC CGTGAGGCGG AATCCAGCCT GCGACGCACC
AAAGAACGGC TCGATATTGC GGCGCTTTCG GCGGAGATCG GGTTGTGGGA ACTCAATCTG
GATACCGGCA GCTTGTGGGC CACACCCAAG GCCAAGGAGC ATTTCGGGTT TGATCCGGAC
ACGGAATTGA CTTTGTCACG GTTGCTGGAC GTGATCCATC CTGAAGACCA TGGGCTGATC
AGCGCCAAGG TGGAGGAGTC GCGCCATACC CGCGAGGAAC TCATGGTGGA GTACCGTGTT
CGGGCCGGGG ACGGATCTTT GCGCTGGATG ATCTCACGCG GTCGGAGCCT CTGGGAGAAT
GGGCATGCCG GCCTCCTGCT CGGGGTTACC GTAGATGTCA CGGCGCGCAA GGAGATGGAA
CTGCAGCTTC AGACGCACAT ACGGGAGATC GAGAGCCTCA AAGTGAAGCT GGAAAGGGAG
AACCAGTATT TGCGCCTGGA GGTGGCGGCG GCCGAGGGAC AGGGGGAGAT TCTGGGCTCC
AGCGAAGCCA TGCGAGCCAT CATGTCGCAG GTCAGGATGG TTGCGCAGAC CGGGAGTACG
GTGCTTCTGC AGGGGGAAAC CGGAACGGGG AAAAATCTGG TCGCAAGCAC CATCCATCGT
TTGAGCGGTC GCGGTAAAAA GGCCATGATC AGGGTCAACT GTGCCGCGCT GCCTGGTCCT
CTGGTCGAGA GCGAACTGTT CGGTCGCGAG AAGGGCGCCT ACACCGGGGC ACTGAGCCGC
CAGGCCGGGC GTTTCGAGCT GGCGGACGGC TCCACCCTTT TTCTCGACGA AATTGCCGAA
ATGTCTCTCG AAACCCAGGC CAAGCTGCTG CGCGTGATTC AGGACGGCGA GTTCGAACGC
CTGGGCAGTT CCAAGACCAT CAAGGTCAAT GTGCGGATCA TTGCGGCCAG CAACAGGGAT
CTGGCCAAGG AAGTCGAAGC GGGGCGCTTT CGTGGCGATC TCTTCTACCG GCTGAATATT
TTCCCCATCC GAGTTCCCCC GCTGCGGGAA CGTCCCGAGG ATATTCCGCA ACTGGTCATG
GAGTTCATCA GGGAATTCGG CGATCGCATG GGCAAGCGGA TTCTGCGCGT CGCCCACAAG
GATATGCAGC TGCTGACAAA CTACTCCTGG CCCGGCAACA TCCGCGAGCT GCGCAACGTG
ATCGAGCATT CCCTCATCAT CACCCCCTGC GACACCTTGG TATTGCAGCG TTTAACTGCC
AGTCCGGAAT TTCATGATGC GGACGCATCC CTTGAGGAGG TCGAACGCAG ACACATCCAG
GCCGTTCTCA AGGCGACAGG CGGCAGGATC AAGGGCTTTG GCGGGGCGGC GGAGCGTCTG
AGGATCAACC CCTCAACGCT CTACTCCCGC ATGCGCAAGC TCGGCATCGG CTTTAAACAA
CCTTGA
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| Protein sequence | MDDIFNLQKL TSAISASMVM ASSESLDGVI NRALDSMLSF LEIARIGLLA VDESSPVINV
DYASYAKDAP HVSKQINLAA LFPWTYDLVI GRGQTMVMAS LDDLPSEAEE DRRSHTMLGN
KSALIIPLFI GSRVHHLLTL DARKTERDWP EEVVVQGRLL GEIFVSALQR REAESSLRRT
KERLDIAALS AEIGLWELNL DTGSLWATPK AKEHFGFDPD TELTLSRLLD VIHPEDHGLI
SAKVEESRHT REELMVEYRV RAGDGSLRWM ISRGRSLWEN GHAGLLLGVT VDVTARKEME
LQLQTHIREI ESLKVKLERE NQYLRLEVAA AEGQGEILGS SEAMRAIMSQ VRMVAQTGST
VLLQGETGTG KNLVASTIHR LSGRGKKAMI RVNCAALPGP LVESELFGRE KGAYTGALSR
QAGRFELADG STLFLDEIAE MSLETQAKLL RVIQDGEFER LGSSKTIKVN VRIIAASNRD
LAKEVEAGRF RGDLFYRLNI FPIRVPPLRE RPEDIPQLVM EFIREFGDRM GKRILRVAHK
DMQLLTNYSW PGNIRELRNV IEHSLIITPC DTLVLQRLTA SPEFHDADAS LEEVERRHIQ
AVLKATGGRI KGFGGAAERL RINPSTLYSR MRKLGIGFKQ P
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