Gene Dbac_0336 details

Gene Information

• Locus tag: Dbac_0336
• ID: 8375984
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfomicrobium baculatum DSM 4028
• Kingdom: Bacteria
• Replicon accession: NC_013173
• Strand: +
• Start bp: 393994
• End bp: 395832
• Gene Length: 1839 bp
• Protein Length: 612 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 644999577
• Product: PAS/PAC sensor signal transduction histidine kinase
• Protein accession: YP_003156879
• Protein GI: 256828151
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG5002] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.84228
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTTTGA AAAAGAAAAT CCTGATCGGC TATGGGCTGT CGTTTGCTTT CATGGGCCTT 
GTCGTGGCTT TGGCCGTGAT CAATCTGGTT GCCCTGGGCA AGGCGACAGA TGCCATTCTC 
AGCGAGAACT ACAGAAGCAT TCTCGCAGCG GAAAACATGG TCGATGCGCT TGAGCGTCAG 
GATAGCGGCA CTCTTCTTGT TCTCATGGGA GAAGTGGAAG AGGGCACGGC TCTTTTCCAA 
AAAAACGAAG CGATTTTTCT CGAATGGCTG GGCCGCGCCA AAGACAACAT CACCATCAGC 
GGGGAAGCTG ACCTGCTGTC TGCCATAGAG GTGGACTATG CATCCTATCA GCAGGTCGCC 
GCAAGTCTGG CCGCGCTGCA GGCAGATTCC GGCGGGTTGA CCTACAGACG GATGATATTC 
CCGATGTTCA TGCAGGTACG CGAGGCCTGC ATCAGCCTGC GCAATATCAA TGAAGAGACG 
ATGTATGCGG CCAGTGTGGA TGCGAAGAAA GTTGCCCATA ACGCCATCGG GTCCACTGTG 
CTGGTTGCAT CCTTGGCATT GGTGGTCGCC TTGATTTTCA GCATGATCCT GGCGGAACGG 
ATAGTTCACC CGATCCGTCG CTTCATGGAG GCTTCGCGCC ACATTTCCGC AGGCGACTAT 
GATGTTCAGG TCCCAGTGGG AGGGTCCGAC GAGTTGAGCC GTCTTGCAAG CGAGTTCAAC 
CAGATGGCCA CTCAGGTCGG TCGATACAAC GCCATGAACA TCGAAAAGGT CATTGCCGAA 
AAGAACAAGA GCGAAGCGGT GCTTGAAAGC ATCGAGGACG GCCTGGTGAT CTTCGATCTC 
GAACTCAAGG TCGCAGGCAT CAATCCAGCG GCATGGAGGA TTTTCGATCT GCCGCCGGTT 
GAAGATCCCG GTTTGCGTTG CGGCGACATA ATTCCCGACT CCAGACTGTG CGACTTGATT 
CGAGACACCG TCGAGACGGG CTGGCCTCCG ACCATGCCGG ACGAACAGCG CGTTATCAGT 
TTTCAGCACG CTGAGGGCGC GGCACACTAC CTGTTCTCGA TCACGGTCAT ACGCGGGATT 
GAGCGCGACC TGTCAGGTGT TGTGTTGCTC CTGAAGGATA TTACCCGCTT GAAGCAGGTC 
GAGCAGCTCA AGAGCGACTT CGTCATGGCG GCATCTCACG AATTGCGCAC TCCGCTGACG 
AGTCTGGGGA TGAGTGTGGA CCTGCTGCTC GAACATGCCT CCCACAATCT TGCCGAGAAG 
GATCGCGAGC TGTTGCTGGC AGCGCACGAG GAAGTGCATC GGATGAAGTC CCTGGTCAGT 
GATCTGCTTG ATCTTTCCAA AATCGAAGCC GGCAGGATCG AGATGGAATT CGAGGACGTC 
CCGGTGGCAA CCTTTTTTGA ACACATGCAG TCAGTTTTCA AAAGCCAGAT GGAATTGAAG 
GAGGTCGCGT TTGTATCGGG AATCCAGGGG GATTTGCCGC TTGTCCGAGC GGACGCCAAC 
AAGATCGCCT GGGTACTCAG CAATCTGGTT TCCAATGCGT TGCGCTACGT GAACAGGGGC 
GGTTGCGTGG CGCTTATGGC GCAGCAGTTC GGGGCGCATG TCCATTTGTC GGTCAAGGAT 
GATGGTTTGG GCATCCCGGA GGAATATCAG GCCAGGATTT TTCATAAATT CGTGCAGGTA 
AAAGGGCAGG AAGCAGGCGG TTCGGGTCTG GGCCTTGCGA TTTGCAAGGA AATCGTCCGC 
GCCCACGGCG GAACGATTTG GGTCGAATCA GTTCCCGGTC GGGGGAGCAC CTTCACGTTC 
ACACTGCCTG TGGTAGGCGC GGGGAATTTA ATGACATGA 

 

Protein sequence

MTLKKKILIG YGLSFAFMGL VVALAVINLV ALGKATDAIL SENYRSILAA ENMVDALERQ 
DSGTLLVLMG EVEEGTALFQ KNEAIFLEWL GRAKDNITIS GEADLLSAIE VDYASYQQVA 
ASLAALQADS GGLTYRRMIF PMFMQVREAC ISLRNINEET MYAASVDAKK VAHNAIGSTV 
LVASLALVVA LIFSMILAER IVHPIRRFME ASRHISAGDY DVQVPVGGSD ELSRLASEFN 
QMATQVGRYN AMNIEKVIAE KNKSEAVLES IEDGLVIFDL ELKVAGINPA AWRIFDLPPV 
EDPGLRCGDI IPDSRLCDLI RDTVETGWPP TMPDEQRVIS FQHAEGAAHY LFSITVIRGI 
ERDLSGVVLL LKDITRLKQV EQLKSDFVMA ASHELRTPLT SLGMSVDLLL EHASHNLAEK 
DRELLLAAHE EVHRMKSLVS DLLDLSKIEA GRIEMEFEDV PVATFFEHMQ SVFKSQMELK 
EVAFVSGIQG DLPLVRADAN KIAWVLSNLV SNALRYVNRG GCVALMAQQF GAHVHLSVKD 
DGLGIPEEYQ ARIFHKFVQV KGQEAGGSGL GLAICKEIVR AHGGTIWVES VPGRGSTFTF 
TLPVVGAGNL MT