Gene Dbac_0278 details

Gene Information

• Locus tag: Dbac_0278
• ID: 8375924
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfomicrobium baculatum DSM 4028
• Kingdom: Bacteria
• Replicon accession: NC_013173
• Strand: +
• Start bp: 330347
• End bp: 330970
• Gene Length: 624 bp
• Protein Length: 207 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 644999518
• Product: Tetratricopeptide TPR_2 repeat protein
• Protein accession: YP_003156821
• Protein GI: 256828093
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3063] Tfp pilus assembly protein PilF

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00000289042
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAATA GAGCTGATTA TGGACCTAAA AGTGTCGATG CATTAAAAGC TGCTTTGCAA 
GATAATCCAG ATTCTGCGGC GCTTTTGTAT AATCTAGGTG TTTCTTTGGT CGCTGATCGC 
AACCTGGCAG AAGCAAAAAA AGCATTTGAA GAGGTAGTGG CGCTGGAGCC GAACATTGCA 
GAAGCGTATG TTCAGCTTGG TGGCTTGGCG ATGCATGAAG GGAATCTCGA CGAATGTCTC 
AAGATGAACC AAAAGGCTGC TGATGTACGG CCGCGTTTTG CTGTTCCGTG GGGCAATATC 
GGGTTTGTAC ACATGCAGCA GCAAAATCCA GACAAGGCCG TCAAGGCGCT CAAGAAAGCT 
TTGAGCTTCG ATCCGCAATT CATTCAGGCA CACACTACGC TTGGCAGTGC TTACCTTGCG 
CTCGGAGATC CGGATGGATG CATTATGCAG TGTTCAAAAG CGCTCGAAAT TGAACCGATG 
TTTGGTCCTG CATACAACAA TATCGGCCTT GCCTATCTTG AGAAGGGCGA GCCCAAGAAA 
GCGATCATGT ATTTCGACAA GGCTGCAGAG ACCGGTTTTG AAGTGGAAGC TCAGGTCCTT 
GAAGAAATCA AGCAGTACCG TTAA 

 

Protein sequence

MKNRADYGPK SVDALKAALQ DNPDSAALLY NLGVSLVADR NLAEAKKAFE EVVALEPNIA 
EAYVQLGGLA MHEGNLDECL KMNQKAADVR PRFAVPWGNI GFVHMQQQNP DKAVKALKKA 
LSFDPQFIQA HTTLGSAYLA LGDPDGCIMQ CSKALEIEPM FGPAYNNIGL AYLEKGEPKK 
AIMYFDKAAE TGFEVEAQVL EEIKQYR