| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_0052 |
|---|
| Symbol | |
|---|
| ID | 8375685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfomicrobium baculatum DSM 4028 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013173 |
|---|
| Strand | + |
|---|
| Start bp | 71820 |
|---|
| End bp | 75062 |
|---|
| Gene Length | 3243 bp |
|---|
| Protein Length | 1080 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644999282 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003156598 |
|---|
| Protein GI | 256827870 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTGCA ATAAAAAGGA CTGGAGATTC GCGCCCTGCC TCCTGGTGGG CGCAGTTCTC
GTCCTCTTCC TTCAGATGGT TCTTGCCTCG GGCGCGCTGG CCGCTCCCGA GAAAATCGTC
GTGGCGGACG ACAAGGATTA TCCACCATAC ATGTTTCTTG ACGCCTCGGG CGAGCCCAAG
GGGATTCTGG TTGACATCTG GCAATTGTGG AGCAGGAAGA CCGGTATCGC CGTCGAGTTT
CAACTCATGG AGTGGAATGA GGCCCTTGCC GCGGTGCGGG ACGGACGGGC CGACGCGGTG
GGCGGGGTGG CCCGTACGCC GCAGCGTGAG GAAATGTTCG AGCTGACGAC GCAGATCGCC
GTCATCCCAT CGGCCATATT CTTTCACGAC CAGCTCGGAG GAATCAAAGA CGTCAAAGAT
CTCACCGGAT TTTCGATAGG AATCGTCAGC GGGGATGCGG CCCGGGACGT GGTCCTGTCC
CGTCATCCGC AATTGCGGTT CGCGACCTTT CCCGGTGCGG GTGATCTTGT CGCGGCGGCC
ATTTCAGGCG AGATCAAGGT GTTTATCTCG GACGTGCCCG TGGCGCGGCA TTATCTGGCC
CGGCATGAGG GCGGTTCCGA TTTTCGCCAG GCCATGGAGC TCGTCTCGAC GGATTCTATG
CACGGGGCGG TTCGCAAGAA TAACAGCGAA CTTCTGCACG TCGTGCAGGG CGGATTCGAC
CAGATCACGG AGTCCGAAAT CAGCGCCATC ATGAACGATT GGTCGGGCCT GCCCGTACAT
TCCGCTTTGC CTTGGCGCAT GATCATTGTC GGATTTTGTT TTTTGACTGC GGTACTGCTG
GGCGTTTTTT TATGGAATTT CTTTCTGCGC AGACGGGTTC AGAATAAAAC GGCCGAATTG
GCCGACTCTG TGCGCGAGGC GAGCGCGCGC GAGGAAGAAT ACAGGCTTCT GGTGGAGCAT
CAGACCGATC TGGTGGTCAA GGTCGATGTG GAAGGCCGTT TTCTCTACGT GAGCCCTGCA
TATTGCAAGA CTTTCGGGAA GACCGAAGAC GAGTTGCTGT GTTCGACCTT CATGCCGCTT
ATTCATGCAG ATGATCTGGC CGCGACCGAA GAGGCCATGA AGGCGCTTTT CGTCCCGCCG
TACACGGCCC ACATGGAACA GCGCGCCATG ACCGTTGACG GCTGGCGCTG GTTGGCCTGG
AGCGATTCAG CCATTCTGGG GCCCGGCGGA GAAATCGAGG CCATCATCGG TGTGGGTCGG
GACATCTCCG AGCGCAAGCA GACCGAGGAA CTGCTGCGCC AGAGCGAGGA GCGCTTCGCC
AAGGCCTTCC ACTCCAGTCC CGCGCCGCTG ATCATCTCCG ACATCGCCAC CGGCCGCTTC
ATCGACGTCA ATGCGCGCTG GGTGGACATG CTCGGCCACG CCAAGGAAGA GCAGATCGGC
CGGACCTCCA AGGAGGTCGG TATCTGGGCC GATCCGCGCC AAAGGGACGA AGCCATACAG
ATTCTGCGCA AGGAAGGTTC CTTCAAGGAG TTTCCCATCG AGTTTCTGAC CAAGACGGGA
GAAATCCGTT CGGCCCTCTG GTCAGCCGAA ATCATCATTC TTCAGGATCG GGAGGTCATG
CTGTCCCTGA TTCTCGACTA CACGGAGAGA AAAAGGGCCG AAGAGGCCCT GCGCAAAAGC
GAGAAATTGT ATCGCTCCGT CATCGACAAC ATACACGACG TATTTTACCG CACCGACGCC
GAGGGGCGTC TGATCATGGT CAGTCCTTCG GGAGTCCGCC TGCTCGCCTA CGAGCACGCG
GAGGAGATGC TCGGGAGACC CAACGAGGAA TTCTGGTTTG CCCCTGCAGC CCGTCAGGCA
TTTTTGGAGC GCATCCAAAA GGACGGGTTT GTCGCGGATT TCGAGGTGGT GCTCAAACGA
AAAGATGGCG AGCCCGTGCT CGTGGCCACG TCGAGCGGGC TTTATCGTGA TGAGGCGGGG
ATCGTTCTCG GGGTGGAGGG GATTTTTCGC GACATCACCG AACGCAAGCG CACAGAGGAA
CGGCTGCGCC AGTCCGAGGA CAAATTTTCT CGCCTCTTCA AACTGTCCCC GGACGCCATT
TCCCTCTCGG ACCCGCAGAG CGGTTTGCTG GTGGAGATAA ATGACGCCTA TGCCGACCTG
ACCGGATACG GGCAGGCGGA GCTTATCGGC AAGACTTCCG TGGAACTGGG CCTGTTCGTC
AATCCGCAGA GCCGCAGGCG GGTGGTTGAA GAGCTTGAGC GCACCGGCCA TGTCAAGAAC
ATGGAGGTCG AATTCAGGCG CAAGAACGGC AGCCACGTGC TGTGCAGCGT TTCGGGCCAG
CTCATGACCA TCGGGCAGGA GCGTTTTCTT CTCGCCGTGA TACGGGACGT GACGGAGTTG
AGGCGCATGC AGGAGATGAT GATCCAAAGT GAGAAGATGG TCTCGGTGGG CGGGATCGCG
GCCGGGATCG CCCATGAGAT CAACAACCCC TTGGGGATCA TCGTGCAGAC GGCGCAGAAT
CTGGTGCAGC GCACGCGGCC GGATTTTCAA AAGAATATCG AAGTGGCCGA GAGTATCGGC
CTTGATATGG CCTTGCTGGA AAGATACATG CAGGCCCGCA AGATTCTGTC CTTTGTGCAG
GACATGCAGG CTGCGGCGCT GCGGGCAGCG GACATTATCC GCCACATGCT CGATTTCAGC
CGCCGCAGCG AATCCAGACG CGCCAGTTGC GCAGTGCCGG CAATTGTGGA CCGCGCCGTT
GCCCTGGCGC AAAACGACTA TGACCTCAAA AAGAGCTTCG ATTTCAAAAG AATCCGCATC
GTCAAGGAGT ATGCGCCGGA TCTTGCGGGG GCCGAGTGCA CGGAGACGGA ACTCGAACAG
GTGTTTTTGA ATCTGTTGCG TAACGCGGCC CAGGCCATGA GCATGGATGA TTCTGTGCCC
GTCGATCCCA TGATCGTAAT CCGTTTGTCG AACGTGGCCT CGGGCGTGCG CTGCGAGTTC
GAGGACAATG GCCCGGGCAT GACGGCCGAG GTTCGCCGCA GGGTCTTCGA GCCGTTCTAC
ACCACCAAGC CTCCGGGAAT CGGGACCGGG CTCGGGCTTT CCGTGTCCTA TTTCATCGTG
ACCCGAGGAC ACGGCGGCAA GATGTGGGTG GAGTCGGCTC CCGGCGCCGG GACCAGATTC
ATCATCGAAC TGCCCGGCAA CGGATTGCGA AGCGAAGGGG GGCAGGACGA AAATTCCGCA
TGA
|
|---|
| Protein sequence | MSCNKKDWRF APCLLVGAVL VLFLQMVLAS GALAAPEKIV VADDKDYPPY MFLDASGEPK
GILVDIWQLW SRKTGIAVEF QLMEWNEALA AVRDGRADAV GGVARTPQRE EMFELTTQIA
VIPSAIFFHD QLGGIKDVKD LTGFSIGIVS GDAARDVVLS RHPQLRFATF PGAGDLVAAA
ISGEIKVFIS DVPVARHYLA RHEGGSDFRQ AMELVSTDSM HGAVRKNNSE LLHVVQGGFD
QITESEISAI MNDWSGLPVH SALPWRMIIV GFCFLTAVLL GVFLWNFFLR RRVQNKTAEL
ADSVREASAR EEEYRLLVEH QTDLVVKVDV EGRFLYVSPA YCKTFGKTED ELLCSTFMPL
IHADDLAATE EAMKALFVPP YTAHMEQRAM TVDGWRWLAW SDSAILGPGG EIEAIIGVGR
DISERKQTEE LLRQSEERFA KAFHSSPAPL IISDIATGRF IDVNARWVDM LGHAKEEQIG
RTSKEVGIWA DPRQRDEAIQ ILRKEGSFKE FPIEFLTKTG EIRSALWSAE IIILQDREVM
LSLILDYTER KRAEEALRKS EKLYRSVIDN IHDVFYRTDA EGRLIMVSPS GVRLLAYEHA
EEMLGRPNEE FWFAPAARQA FLERIQKDGF VADFEVVLKR KDGEPVLVAT SSGLYRDEAG
IVLGVEGIFR DITERKRTEE RLRQSEDKFS RLFKLSPDAI SLSDPQSGLL VEINDAYADL
TGYGQAELIG KTSVELGLFV NPQSRRRVVE ELERTGHVKN MEVEFRRKNG SHVLCSVSGQ
LMTIGQERFL LAVIRDVTEL RRMQEMMIQS EKMVSVGGIA AGIAHEINNP LGIIVQTAQN
LVQRTRPDFQ KNIEVAESIG LDMALLERYM QARKILSFVQ DMQAAALRAA DIIRHMLDFS
RRSESRRASC AVPAIVDRAV ALAQNDYDLK KSFDFKRIRI VKEYAPDLAG AECTETELEQ
VFLNLLRNAA QAMSMDDSVP VDPMIVIRLS NVASGVRCEF EDNGPGMTAE VRRRVFEPFY
TTKPPGIGTG LGLSVSYFIV TRGHGGKMWV ESAPGAGTRF IIELPGNGLR SEGGQDENSA
|
|---|
| |