| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dbac_0008 |
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| Symbol | |
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| ID | 8375639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfomicrobium baculatum DSM 4028 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013173 |
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| Strand | + |
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| Start bp | 17501 |
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| End bp | 24511 |
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| Gene Length | 7011 bp |
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| Protein Length | 2336 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644999236 |
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| Product | Hemolysin-type calcium-binding region |
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| Protein accession | YP_003156554 |
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| Protein GI | 256827826 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | [TIGR03660] T1SS-143 repeat domain
[TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAAA CTCAGAATTC CAAACAGAAC GTACAGGCTC CCCAGGCTGG ACAGACCGTG
GTCGTGAACG CGATTCCGGG CCAGGACATT GTGCTCGAGG CTGCTTTTGA TCAGGCCGAA
GTGAAGATGG ATGGCGGCAA CGTGGTTTTC GAGTTCGCAA ACGGCGGCCA GGTTGTCCTC
GACTTCACGG ATCTGGGCGA AGCCCAGGCC CCCAATGTTG TCATGCCTGA CGGCACGATT
CTGAACATGC AGGAATTTCT GGCCTCCCTG GGCGAAAAAG ACATCGAACC CGCAGCCGGG
CCCGAGGGCG GCGCTGACGG CAGTGGCGGT GTGGGTGAAT ATCAGGATGA TGCGGGCGAT
TTGCTTGGTG GCGTGGACAA GCTGGGTGTG CTCGGACCGC GGGCATTTTC GGCTTTTTCC
GTGGAGGCGC TGGAGGCCAA CGGCAGTATT CCGACCTTGC TGGGCGGGGA GAGTGTCCTC
GTGGAAGATG AAAAAATGCT ACCTGAAGGT AACGATGAAG ACGACGGTGG CGTCGGCTCC
GTGACCGGCA CTATTGTCGA CAACGTGGAT TGGGGTGCCG ATGGCTTTGG CGAGGTGACC
GGCTTCAATG TTGGAGGAGC ATCCTTCTCT GCCGGTTCCA CGGTTTTTTG GGGTCAGGAT
GGCACATTTC TGGGAACCTC CGGCGAGGGT GCTGCCGCTT CGCTGGTTGT AGGTGCCGAT
GGCTTTTACA CGTTCACTTT GCTGGACAAC ATGCTGCTTG GTGAAGGCGT GCAAGGCGAG
CAGATTAATG TGCTGGGCAC GGTGCAGATT GTTGGTGCCG ACACGACCGG TGATGAGGTT
GAGATTCCGC TGACGCTGAA CGTTCAGGAT GATGTGCCGG AGATCGTCGG TGAGATGAAT
TCCGATACTG CGATCGTCGA AGATGAGGCT ACGAGAGGCG GGATTAACGA ATGGTGGGAT
GGTTTGAAAG GAAAGTTCGA AGGAACCATC GAAGATAATG TGAAGTGGGG TGCCGATGAA
TTTCGGGGAG TTACCGAATT CAGCATAGGT GAGCAGGTTT TCACGGTCGA GGCTGGTGAA
AGCACTACCG TTTATTGGGA CCAGCACGGC AAACTTCTTT CTCTTGGCGA CGAGCCTTCC
AATGGCCCGG AAATGAGTTT TGCGAGTTTC GGCAAGGGAT ACGATGGAGA ATTTCGACCT
GCCGCATCCC TGGAAGTCAA GAGCGACGGA ACGTACATCT TCAGATTGCA TGATAACATG
CTCCTCGGTG TAGGAGAAAA GGGTGAGCAG ATAGACGATC TGGCGACCGT CATGATCACG
GGTTTGGACA ACGATGGCGA CGCGGTTCAG GTGGGTGTGA ATCTGCAGGT CCAGGACGAT
GTGCCGCTTT GTTTGACTTG GCCTGACTAC GCTATTGTCG AAGACGAGAA GATGGAGGGC
GGCAACAATG AGCCGGGGAG CTGGTTTTTT CCGGACTTGC CGTCCCAGGT CGATGGCACG
ATTGAAGATA ACGCAGCATG GGGAGCCGAT GGATTCGGAC GGGCTACAAC TTTTGAAATT
GATGGGTACT CGTTTGCAGT CGGAACTACC GTGTTTTGGA ATCAACATGG CAATCTTATT
TTGCCCGAGG GTATGGAAGG CGAAGATCAA GTTCAATTTA GGGGAGCTGT TTCGATATCC
GAAGTTTCTG AAGAGCCAGA AGGAGCGGCA GCGTCCTTGA TCGTGAATGG CAACGGTTCC
TATACGTTCA CGTTGATAGA TAACATGCTT ATGGACGGTA AGGGCGAACA ATACGACTTG
CTCGATCGGG TCAAGGTTAA TGCTGAGGAT GGAGATGGTG ACAAGGTCAG CGTCTATGTG
AATCTGATCG TCAAGGATGA CAAGCCTGTT TTGGATGAAG ATGGTGTGTT GCGCCTCACG
TTGGAAGAGG AATCGGTACC GGGAGATGAC GGCGTAATAG GGAACAATGA GCCAGGTGAC
GGTTTGAGTT ATACTTCCGG TGAACAGTCC ATGCGTGGCG CTGTAAAGTG GGGTGCCGAC
GATTTTGGGA AAGTTGTTCA GCTGCAATTC GGTTCTGGAC GTGGGGTTGT TAGGATTGAT
GTCGATCAGG AAGATGGCGG CATTGTATAT TTTGATGCAG ATGGTAATCC TCAGTCAACT
TCAGTTGGCT CGGCTGCGAT TCTTGAGGTT CAAGCGGATG GCCAATACAC GCTTACGGTA
ACAGGCGCTA TGAATCACCT CTTGCAAGGA GAAGATCGCC TTCCCCTTGG TGCTGTTAAA
ATAATAGCTC AGGATGGCGA TGGTGATAAA ATTTCTGTGC GTTTAGAAGC AGAAGTTCAG
GATGATGTGC CTGTAATCAC CGTAACGGAC CCAACTCCTG TTCCCGGTAT AACCGTACAG
TTGGTTGGCA GTGATGCCGG CTATAACAAC ACCTGGGGCT ACTACATCAA GGCTGAGAAT
GGCGAGCCGG ATACTGGCGT GGTTGTGTGG GATTCTGTAA AAAATCAGCC CGTAACAAGC
GTGACGTTGC CTGAAGGGGT GCTGCCCGGC CAAGTTGGTT TTTTTCTCAT CCCGAACGGC
GATTCATTGA ACCAAAACCT GACTTCCGGC ACGGAGGTGA CTTTTAGCTT GGTTAATGGG
CAGTGGGTGG TGTCCGCACA AGGAGTGCCC TTGAATGGTG TAGGCGCTCC AGCTTTGTTT
GATAACAGCG CGCTGAACGC TGATGGAAAG TCATATATAA ATACCGTGGC AACCGGATCA
GTCACCGGGA ATCAGAATTG GGAAGATGTT TATGGCGGCG GCGATGGCGA TTTTAATGAT
GTTATGCTTA ATGTCACCAT GCCCTTGCTT GTGGATGACA GCTTTTTGAA TGTTGATGCA
ACCTCCGATG TAGGGCGGGC TCGCTTCAGT GTGGATTACG GAGCAGATGG CGCCGCTGAA
CTCGAGAGCA AGGTTTATAA TTTGACCCTC GAGAAAAATG AATCGGGTCT GGAAGACACG
GCGCTGAAGT CCAATGGTGA AAATGCAGCC GTGTTGTTGA AGACGGATGG AAGTACCAAG
GTAATTGGTT ATGTTTTGGT AAATGGGGTG GAAACCCCTG TGTTTACTCT GTCGGTTAAC
GCTGCAACGG GAGAAGTGAC CCTGGACCAG CACCGCGCGG TTGTTCATCC GACAGCAGGT
GACTCCAATG AAATAATCCG GGTTTTGGAC GGAGCAATTT TGCTTGAACT CACCGCCAAG
GATGGCGACG GTGACTTGGT AAGCGCGAGC CTCGACATAG GACGCATGCT CTATATCGCC
GATGATGGTC CTGTGGCCAA TGATGATGCC GATACAGCCG TGTGGCAGGT CGACAGGCTT
GAGGCTTCCG GTAACGTTCT TACAGGAGTT GGCACGGCCA GCGAAGACGC CGGAAAGGAT
CTCCATGAAG GCATGACTGA TGGTGCCGCC GCGGCAGTTG TCGGCGTGCG GTCCGGCGCA
GAGGGTGAAA CCTGGGTGGA AGGAGAAGAC ATCGCCAGCG GCGGAAGCGC GACAGTTTCC
GGAAGTTATG GAACGCTGAC CATGGAATCT GACGGTGACT ATACGTACGC AGGTAAAGTC
ACAAATCTCG TGCTTAACGC CGATGACAAC ACGGAAGCGT TTAATTTTGG CACAAGTTAC
AGTGAAAATT TGGGTGAAGA GCTTCATCTT GACAACGCAG ACGGAACAAT AGTCAGCGTT
GCAAATGGGT TAGGGGTAGC CGGGAAGACG CCTGACACCT CCAATTCCGT GTCCGACCAG
CTTGGATTCT CGCCCAAGGA GGGCTCGGAA GCTCTCTCCG TCAATCTCGA GACCATGGCT
GTTCGAGCAG TCGTCGATAT CTCCAATTTG TACCAGAATG AATCAGGGCA GAGCGGAAAT
AATGGTGAAA CAGGCCGGTG GGAAGCTTTT GATGCTGAAG GATTCAAAGT TGGTGAGGGT
TACATTGGAG GGGAACTCTT TGACAATGTC AACGTGCATC AAGGGCAGGT TGAAGTCGAA
GTCATGGGCG CAGATGGTAA ACCTATAGCG TTTCAGTATA TCGTGTTCAG CGCTGTTGAT
TACCTCGGTG GTGACAAGGC TAACGACAGT TCTGACTACT ACGTGAAGGC TGTCAGTTTT
GAAGAATACG TAAAGCCTGG ATCCGAAGAT GAATTTAGCT ATCAGATGAA AGATGGCGAC
GGCGATACCG ATAGCGCAAC CTTGACCATT ACAACCGGTC ATGACTTGAG TTCCGGTGAC
ATCGGAGTTG TGCATGAAGA TGCGCTTTCC TCTGGAAATC TGGATAATTC TTCTCAAGGT
CTGACCACCT CGGGCTCTTT GAACATGGGC GCGGGTGAGT ACTCCCTCGT CGCGCCGGTG
CAGAAGATCA CCTCCGATGG CCACAATGTT GAGTTTGTGG TGGACAACAC CGGGGAAGAG
TCGATCATGT TTGGCAGGGT TGCCGATGGT GACTCTTTCA GAAACATCTT ACAGGTCACG
ATGGACAAGG GCGACGGTTC TTACACGGTG ACTTTGCTTG GGCAAGTTGA TCATCAGTAT
GCGGTTGAGA CCAGTGGGAA CCCTGATGGA AGTGGCGCTG GTGAGACGGA AATGTTGTAC
CTGCAGTTTG TTGCTGCAAA AACAGCAGAA GGAACCACAG AATATCAAGG TTTTAATATT
AAGATCGAGG ACGATGCGCC TGTTATTCTT GCATCGCCGA ATTTGGTAAC CAACGGCAGC
TTCGAGAACC CCGACGTGAC GGGTTGGGGA ACTTATGGAA ATATCCCAGG CTGGAAGGCT
GAAGCTGGTC AGATCGAGAT TCAGGATTCT GGCGCCGGCG GTGTTGCGGC ACAGCATGGT
GGTCAGCTGC TTGAGTTGGA TGCACATGGC GGAACTGCCA CTAATGCTAC TGTAACCCAG
AGCATACCGA CTGCGAATTA TGGCAATTTA GTACTAAGTT TCTGGTTTGC ATCTCGCGCT
TATGGTGACA TTGCCGAAAC CAACACGGTT AAAGTGTATT GGGGTGATGT CGAGATCGGT
GAAATAACCG ATTCTGTTGC AGGTCGCTGG ACGCAGCATA GTTTCAATGT TGCAGGAAAC
CCGGATGGTT CAGATGTCGA GCTGCGATTT GTTGGTGCTG GTACAGATGA CAGTTATGGT
GGCCTTATCG ACAATGTGAG CGTGTACAGC ATGCCCAGTG TCGATGAAGA AGGGCTGCAC
GTCGCGACTC CTGTTTTCAC GACGGCCTCG TTGCCCGTGC TCTTTGGTGC TGACGGCCCA
GGGGATATAG TGGTTGATTT GGATGTTGTC GGTTTGAAGT CGAACGGCGA TCAGGTCAGC
ACGGCCTGGG ATCCTTCTAG TCATATTTTG ACGGGAACCG CTGGCGGCAG AACGGTTTTC
ACCTTGGAGG TTGATCTTGA TACTGGAAAG TATACATTTT CTTTGAATGA TCAGCTCGAT
CATGCCGCAA CTTCTGATTT TATGGCGCTT GACTTCACGT TCACTGCTAC TGACGGAGAT
GGGGACTTTG TTGACGGAAC GTTTGCGGTG GGTGTGTTCG ATGATGAACC GACCGCACAC
GCTGATTTTG ATGGCGTCAC TTCTGTGCCG AATAGTACCG CAGCACCTTT GGCAGTCGGG
AATGTGCTGG ATAATGATTC GATTGGCGCC GATGAAGACG CGACGGTGAC CCATGTTTCG
TTCGCGGGCA ACACGTTTGC GGTTGATTCA GATGGCGTGT CAGTTAAGGG GAATTACGGC
ACGCTTTTCA TGGAGCAAGA TGGTAGCTAT GAATATGTTT TGAATGGAGA AACTGTTATC
ACTAACGGTC TGAATGAGAA CTTGGTGAGC ATTTATGGGG CTACGACATT ACAGATATTT
GAGAGTAATA ATGGCGTTTT GTCTTTAGAT GTTTCTGAAA TACAGCCTGG TGGTTATGCT
TGGACTGGCG GAGAAAAGAA AGCGGGTTGG GGAGTGACGC AGAAGATGCC TGCCACAATA
GATTCAGGGG AGTCGCTTGT TTTCAAATTT GTAGAACCTG TAACGACTCA GACCTTTACG
TTTTCTTTAG GTCAGAACAA TGCTGGGCAG GCCACGATCC CAAATTGGTA CGCATTTTCA
TCCACAGGTT CTCTGCTCGG ATCCGGGAAT TTTGCGGACC CGAACAACTC CGGAGAATTG
ATTCCTGATT TGAAGGTCTC AATTTCTGGT GAAGTTTCTT ATATAGTTTT TTCACACCAA
TCAGCCACCA ATTCTCAAGG CTTTGTTATT TCGGGCATCT CATATGGAGA AGGCGATACG
GGAATTGACC AGTTCGAATA CACCATGCAG GATTTTGATG GAGACGTGTC CAGCGCAAGT
CTTTACATAA CCTCTGATGA GTACCGGGAA GGAGATGCAG GCAGTAATTC GTTGTATGGA
CACGAAGGAG ACGATATTCT GCTCGGCCTT GGCGGAACGG ATACGTTGAT GGGTAACGAT
GGCAATGATG TCCTGCACGG TGGGGATGGC GATGATTTCC TCAACGGCAA CAAAGGCGAG
GATCAGCTTT ACGGAGACGC CGGAAACGAT ACGATCCATG GGGGCATGGA TGATGACGTC
ATTTATGGTG GGTCCGGTGA CGATCTGATA TATGGCGACA AGGGTGATGA TACAATGTCC
GGCGGAGAAG GTCGTGATGT CTTTAAATAT GCTGGTGACG CTTTGGAAAA TACCACCAAT
GGCGACGTGA TTTTGGATTT CGATTACGAT AAGGATCAGC TGGATTTGAG TGATTTACTC
AATGGAAAAG ATGCAGATGG TCTTGGTGAC TATTTGAAGA TTGAAAGTTT TGAATCAATT
GATTCGACTA CTGCTAAGGT CGTTATTCAG GTTGATGCTG ATGGCAGTGA TAATGATTCG
GATTTTTCAA CCACATTGGC CACTATTACC ATGAATAACT TGGATCCAAG CATCGATGAT
ACCAATATCC TGAATGCGAT GCTGGCTGAC GGCGCCCTTA AGATAGTTTA A
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| Protein sequence | MAETQNSKQN VQAPQAGQTV VVNAIPGQDI VLEAAFDQAE VKMDGGNVVF EFANGGQVVL
DFTDLGEAQA PNVVMPDGTI LNMQEFLASL GEKDIEPAAG PEGGADGSGG VGEYQDDAGD
LLGGVDKLGV LGPRAFSAFS VEALEANGSI PTLLGGESVL VEDEKMLPEG NDEDDGGVGS
VTGTIVDNVD WGADGFGEVT GFNVGGASFS AGSTVFWGQD GTFLGTSGEG AAASLVVGAD
GFYTFTLLDN MLLGEGVQGE QINVLGTVQI VGADTTGDEV EIPLTLNVQD DVPEIVGEMN
SDTAIVEDEA TRGGINEWWD GLKGKFEGTI EDNVKWGADE FRGVTEFSIG EQVFTVEAGE
STTVYWDQHG KLLSLGDEPS NGPEMSFASF GKGYDGEFRP AASLEVKSDG TYIFRLHDNM
LLGVGEKGEQ IDDLATVMIT GLDNDGDAVQ VGVNLQVQDD VPLCLTWPDY AIVEDEKMEG
GNNEPGSWFF PDLPSQVDGT IEDNAAWGAD GFGRATTFEI DGYSFAVGTT VFWNQHGNLI
LPEGMEGEDQ VQFRGAVSIS EVSEEPEGAA ASLIVNGNGS YTFTLIDNML MDGKGEQYDL
LDRVKVNAED GDGDKVSVYV NLIVKDDKPV LDEDGVLRLT LEEESVPGDD GVIGNNEPGD
GLSYTSGEQS MRGAVKWGAD DFGKVVQLQF GSGRGVVRID VDQEDGGIVY FDADGNPQST
SVGSAAILEV QADGQYTLTV TGAMNHLLQG EDRLPLGAVK IIAQDGDGDK ISVRLEAEVQ
DDVPVITVTD PTPVPGITVQ LVGSDAGYNN TWGYYIKAEN GEPDTGVVVW DSVKNQPVTS
VTLPEGVLPG QVGFFLIPNG DSLNQNLTSG TEVTFSLVNG QWVVSAQGVP LNGVGAPALF
DNSALNADGK SYINTVATGS VTGNQNWEDV YGGGDGDFND VMLNVTMPLL VDDSFLNVDA
TSDVGRARFS VDYGADGAAE LESKVYNLTL EKNESGLEDT ALKSNGENAA VLLKTDGSTK
VIGYVLVNGV ETPVFTLSVN AATGEVTLDQ HRAVVHPTAG DSNEIIRVLD GAILLELTAK
DGDGDLVSAS LDIGRMLYIA DDGPVANDDA DTAVWQVDRL EASGNVLTGV GTASEDAGKD
LHEGMTDGAA AAVVGVRSGA EGETWVEGED IASGGSATVS GSYGTLTMES DGDYTYAGKV
TNLVLNADDN TEAFNFGTSY SENLGEELHL DNADGTIVSV ANGLGVAGKT PDTSNSVSDQ
LGFSPKEGSE ALSVNLETMA VRAVVDISNL YQNESGQSGN NGETGRWEAF DAEGFKVGEG
YIGGELFDNV NVHQGQVEVE VMGADGKPIA FQYIVFSAVD YLGGDKANDS SDYYVKAVSF
EEYVKPGSED EFSYQMKDGD GDTDSATLTI TTGHDLSSGD IGVVHEDALS SGNLDNSSQG
LTTSGSLNMG AGEYSLVAPV QKITSDGHNV EFVVDNTGEE SIMFGRVADG DSFRNILQVT
MDKGDGSYTV TLLGQVDHQY AVETSGNPDG SGAGETEMLY LQFVAAKTAE GTTEYQGFNI
KIEDDAPVIL ASPNLVTNGS FENPDVTGWG TYGNIPGWKA EAGQIEIQDS GAGGVAAQHG
GQLLELDAHG GTATNATVTQ SIPTANYGNL VLSFWFASRA YGDIAETNTV KVYWGDVEIG
EITDSVAGRW TQHSFNVAGN PDGSDVELRF VGAGTDDSYG GLIDNVSVYS MPSVDEEGLH
VATPVFTTAS LPVLFGADGP GDIVVDLDVV GLKSNGDQVS TAWDPSSHIL TGTAGGRTVF
TLEVDLDTGK YTFSLNDQLD HAATSDFMAL DFTFTATDGD GDFVDGTFAV GVFDDEPTAH
ADFDGVTSVP NSTAAPLAVG NVLDNDSIGA DEDATVTHVS FAGNTFAVDS DGVSVKGNYG
TLFMEQDGSY EYVLNGETVI TNGLNENLVS IYGATTLQIF ESNNGVLSLD VSEIQPGGYA
WTGGEKKAGW GVTQKMPATI DSGESLVFKF VEPVTTQTFT FSLGQNNAGQ ATIPNWYAFS
STGSLLGSGN FADPNNSGEL IPDLKVSISG EVSYIVFSHQ SATNSQGFVI SGISYGEGDT
GIDQFEYTMQ DFDGDVSSAS LYITSDEYRE GDAGSNSLYG HEGDDILLGL GGTDTLMGND
GNDVLHGGDG DDFLNGNKGE DQLYGDAGND TIHGGMDDDV IYGGSGDDLI YGDKGDDTMS
GGEGRDVFKY AGDALENTTN GDVILDFDYD KDQLDLSDLL NGKDADGLGD YLKIESFESI
DSTTAKVVIQ VDADGSDNDS DFSTTLATIT MNNLDPSIDD TNILNAMLAD GALKIV
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