| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bfae_29200 |
|---|
| Symbol | |
|---|
| ID | 8401464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Brachybacterium faecium DSM 4810 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013172 |
|---|
| Strand | - |
|---|
| Start bp | 3293054 |
|---|
| End bp | 3294349 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644998952 |
|---|
| Product | endopolygalacturonase |
|---|
| Protein accession | YP_003156271 |
|---|
| Protein GI | 257070016 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGTCA CCTCGCCCCC GCAGGACCTC GTCGACCCCG CCGTCGCGAC GACGCAGTGG
CAGCGCGCCC TCGACGAGGC CGCAGCCGCC GGAGGCGGCC GGGTGAGCGT GCCCGCCGGC
GTGCACCGCA CCGGTGCGCT CCGCCTGCGC AGCGGCGTCG AGCTGCACCT CGAGGCCGGG
GCGCTGCTGC AGTTCGTGCC GGATCCGGCG CTGTACCCCG CGGTCGAGGC GCGCTGGGAG
GGGGCCGTCG GCCGGGTCCA CTCGCCCTGC CTGTACGCGC ACGGCGAGCG GGACGTGGCG
ATCACCGGGC TGGGCACGAT CGACGGCGGC GGGCAGACTT GGTGGGACAC CTTCCGCCAT
CGCCGTGAGG AGCTGGCCCA TCCGCGTCCC ACCCTGATCG GCCTGCACGA GTGCGAGCGG
GTCACGATCC GGGATGTCGC CCTGCGCAAC TCGCCGGCCT GGACGGTGCA CCCCTCCCTC
TGCGAGGACG TCACCCTCAC GAACCTGCAC ATCCACAACC CCGCCGAGTC GCCGAACACC
GACGGCATCG ACCCGGAATC CTGCCGCAAC GTGCGCATCA GCGACTGCCA CATCGACGTG
GGGGACGACT GCATCGCGCT CAAGGCCGGC ACGGAGCGCA CCCCGGACCG CGTCGCGACC
GAGAACGTCA CCATCACCGG CTGCACGATG GTGCGCGGCC ACGGCGGCGT GGTGATCGGC
AGCGAGATGA GCGGCGGCGT GCGCAACGTC GTGATCAGCA ACTGCGTGTT CCAGGGCGCC
GACCGCGGGA TCCGGCTCAA GACCCGCCGC GATCGCGGCG GCACCGTCGA GAACGTGCGC
GTGAGCACCA TCGTCATGGA CGACGTGCTG TGCCCGCTGA CGGTCAACCC CTTCTACTTC
TGCGGCCCCG ACGGCAAGGA GCCGCACGTG GGCGACCGCA CCGCCCGGCC CGTCGACGCC
GGCACACCCC ACCTGCGCTC CCTGCACCTG TCCCACCTCA CCGCCACGAA CGTGCATGCC
TCGGCCGGTC ACGTCTTCGG CCTGCCGGAG GCGCCGCTGA GCGATTTCAG CCTGCACGAC
GTGTCGATCA CCTTCGCCGC CGCGCCCCGC GCCGCCGCTC CTGAGATGGC CTCCGGCGTC
GAGGAGCGGA CCCGCTCCGG GATCGAGCTC GGCTTCGTCG CGGACGGCGA GCTCAGCAGG
GTGCGGGTGC GCGGGGCCGA CGGGCCGGCC GTGCAGACGA CCTCCTGCAC CGACCTCGAC
CTCGACGTGA GGGGGAGCGA TGACCACCAT GGCTGA
|
|---|
| Protein sequence | MTVTSPPQDL VDPAVATTQW QRALDEAAAA GGGRVSVPAG VHRTGALRLR SGVELHLEAG
ALLQFVPDPA LYPAVEARWE GAVGRVHSPC LYAHGERDVA ITGLGTIDGG GQTWWDTFRH
RREELAHPRP TLIGLHECER VTIRDVALRN SPAWTVHPSL CEDVTLTNLH IHNPAESPNT
DGIDPESCRN VRISDCHIDV GDDCIALKAG TERTPDRVAT ENVTITGCTM VRGHGGVVIG
SEMSGGVRNV VISNCVFQGA DRGIRLKTRR DRGGTVENVR VSTIVMDDVL CPLTVNPFYF
CGPDGKEPHV GDRTARPVDA GTPHLRSLHL SHLTATNVHA SAGHVFGLPE APLSDFSLHD
VSITFAAAPR AAAPEMASGV EERTRSGIEL GFVADGELSR VRVRGADGPA VQTTSCTDLD
LDVRGSDDHH G
|
|---|
| |