Gene Bfae_12980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBfae_12980 
Symbol 
ID8399845 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBrachybacterium faecium DSM 4810 
KingdomBacteria 
Replicon accessionNC_013172 
Strand
Start bp1459856 
End bp1461160 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content71% 
IMG OID644997366 
Productalpha-L-fucosidase 
Protein accessionYP_003154731 
Protein GI257068476 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3669] Alpha-L-fucosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0194467 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACACAG CCCCTGACGG CACCGCCGCC GACACCGATA TCCTCCGTCC CACCCCTGAA 
CAGCTGCAGT GGCAGAAGGA TGGCCTCGGC GTCTTCTTCC ACTTCGGGAT CAACACCTTC
GCGGGCAAGG AGTGGAGCGA CGGCTCCGTG CCCTCCGACC TCTTCGCGCC CAGCGACCTC
GACACCGACC AGTGGGTGCG CACCGCCCGC GACCTCGGCG CCGTCTACGT GATCCTCACC
GCGAAGCATC ACGACGGCTT CTGCCTGTGG CCCACCGCGA CGACCGACTA CTCCGTCGCC
TCCTCCCCGT GGCGCGACGG CACCGGCGAC GTGGTGGCGG AGCTCGCCGC CTCCTGCCGG
AAGCACGGCA TGAAGCTCGG CCTGTACCTC TCGCCCTGGG ACCGCAACGC CCCGCAGTAC
GAGGACCCGG AGGTCTACGA CGAGTTCTAC CTCACCCAGC TGCGGGAGCT GTGCACGAAC
TACGGCGAGC TGTACGAGCT GTGGTTCGAC GGGGCGGGCT CCGCGGGCCG GGAGTACGCC
TGGGACCGCA TCGGTGCGCT CATCGCCGAG CTGCAGCCCC AGGCGATGGT CTTCAACATG
GGGCCGGCGA CCATCCGCTG GGTGGGCAAC GAGGACGGCC TGGCCTCCGA CCCGGTCGAG
TACGTCACCC GCTCCACGGA TCTCAACCAG TACGACCCCG ACGTGGTGGA CCTGGGCCAG
GCACGCTACC TGCCCCCGGA GTGCGACGTC TCCCTGCGCC GCGGCTGGTT CTGGCAGGAG
GGAGAGTCGC CCAAGGACCT CGCTCACCTG CTGGGAATCC ATGACCGCTC GATCGGTCTG
GGCGCCAACC TGCTGCTGAA CATCCCGCCG AACCGGGCGG GGCGGATCGG CGAGGACGAT
GCGGCACGCT GCCGTGAGCT GCGTGCGGCG CTGGACGCCC GCTTCGGCTC CCCACAGCCC
GCCGCGCTGT CCCAGGAGAC GGACTCGGTG GTGCGCCTGG ACCTGCCGGC CTCCGCGGAG
CAGGGCTTCG ACCACATCGA GCTGCGCGAA CGGCTCGAGG AGGGTCAGCG CGTCCGCTCC
CACCGCATCA CCACGGACCA GGGGCAGCTG GTCGCCGAGG GCGGCACCAT CGGCGTGCGT
CGCCTCCACC GGCTCCCTCA GCCGCTGCAC GCCCGCACCC TGCGCGTCGA GCTGGTGGGC
GAGGGAGCGG TGCTGGAGGA TGCCTGCGTG CACGATGCCA GCGGCGCGCC CGTGCCCGCG
CTGGACGAGT CGAACAAAGC CCCGTCGACC GCTCCGGTGG ACTGA
 
Protein sequence
MDTAPDGTAA DTDILRPTPE QLQWQKDGLG VFFHFGINTF AGKEWSDGSV PSDLFAPSDL 
DTDQWVRTAR DLGAVYVILT AKHHDGFCLW PTATTDYSVA SSPWRDGTGD VVAELAASCR
KHGMKLGLYL SPWDRNAPQY EDPEVYDEFY LTQLRELCTN YGELYELWFD GAGSAGREYA
WDRIGALIAE LQPQAMVFNM GPATIRWVGN EDGLASDPVE YVTRSTDLNQ YDPDVVDLGQ
ARYLPPECDV SLRRGWFWQE GESPKDLAHL LGIHDRSIGL GANLLLNIPP NRAGRIGEDD
AARCRELRAA LDARFGSPQP AALSQETDSV VRLDLPASAE QGFDHIELRE RLEEGQRVRS
HRITTDQGQL VAEGGTIGVR RLHRLPQPLH ARTLRVELVG EGAVLEDACV HDASGAPVPA
LDESNKAPST APVD