| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bfae_03980 |
|---|
| Symbol | |
|---|
| ID | 8398946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Brachybacterium faecium DSM 4810 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013172 |
|---|
| Strand | - |
|---|
| Start bp | 455221 |
|---|
| End bp | 456921 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644996486 |
|---|
| Product | arabinogalactan endo-1,4-beta-galactosidase |
|---|
| Protein accession | YP_003153861 |
|---|
| Protein GI | 257067606 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3867] Arabinogalactan endo-1,4-beta-galactosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACCC ACCGCTCCCC CGCCGCCTCG GCCGGAGCCG CCCCGGGGCC CGGACGCCGT
GACGCCGCCT CGCACGGCTC GCACGGAGCG GCGACCCTGT CCCGGCGCTA TCTGGGCGGG
CTCGCCGCTA CGGGGGCGGT GCTGGGCACC GGCGTGCTCC TGGCCGCACC GTCTCCGGAA
GCCGAGGCGC GGGCGGCGGC CCAGCCGGCG AATCCCGGGT TCGCCGAGGG GCTGTCGCGG
TGGAGCGTCT CCGGTCAGTC CTCCGCGGCG GAGGTCCGGG CCGCAGGCGG GCGCCCGCAC
GTGCTCCATC TCGAGCCCAC CCCCGGCCAG GAGGTCGCCG TCTCGCAGCG GGTCGTCGTG
GGTCAGGGCG GCGACATCAC CCTGCGTGCG CTGGTGCGGG CCGGCGGGGA TGGCCGAGCC
GCCTCCCTCG AGCTGCGCAA CCAGGGCCGC ACCTCTCATG TGCACGTGCC CGTGACGGGA
GCCGAAGGCA CCTGGCTCGA ACTCGCAGTG AGCGCGCCGG CCGCTCGCGG AGCCCTCGAC
ATCACCCTGC GCGTCAGCGG CGTCGAGGGC GCGTGGGCGC AGGTCGACGA GCTCCGCTTC
ACGCCGGACC TGGCCACGCG CACGGTGCGC GGGGTGGATC TCTCCGGCGT CCCGAAGAAC
GAGGAGCACG GCGCCGTATA CACCACGCCG GACGGCGCCG AGCCGGTCGA TCCCGTCGAG
CTGATGGGGC GCAGCGGGGC GTCCCTCGGC CGCCTGCGAG TCTGGGTGGA CCCGGCCGAC
GGGTACTGCA CGCCGGAGCG GACCGTGGGG ATGGCTCGCC GGATCCGGGA CGCGGGCATG
GACGTGCTGG TCGATTTCCA CTATTCCGAC ACCTGGACGG ATCCCGGTGC GCAGCATGTG
CCCGCGGCAT GGGTGCAGCA CGATCCCCAG CAGCTGGAGG ATGCTGTCGC CGAGCACACC
CGCTCCACGC TGACGCTGCT GCGCGATGCC GGTGTGGATG TCGCTATGGT CCAAGTGGGC
AACGAGATCA ACCCGGGCAT GCTGTGGCCG CACGGCCAGA CGTGGGACGT GGATCCGGAG
GACGGCGTCG AGGGCGCTCA GTGGGAGAAC CTCGCGCGGT TCCTGCGCGC CGGCGCCGGG
GCGGTGGCCG AGGTGTTTCC CGCGGCAGAG GTGATGCTGC ACCTGACGAA CCTCCAAGAC
GGCATCGAGG GGTTGACCTG GTGGCTCGAT GAGGCAGTCT CGCGTGAGGT CCCTCTGGAC
GTGATCGGTC TGTCCTATTA CCCCTACTGG CACGGCACCC TCGCGGACCT GCAGGAAGCG
GTCACCACGC TCGGCACCCG CTACGAGCGG GACGTGATCG TGGTCGAGAC CGCCTATCCA
TTCACCCTCG AGGACGATCC CCGCGCGCCG TTCCCCAACA TCGTCGATGC GGAGACGGAC
CTGCCCGAGG GATACCCGCC CACGCCCGAC GGGCAGGCGG CCTTCTTCCG CGCGGTCCAG
GACGTCACCG TCGCGGCCGA GGGCCGCCGA GGACGCGGCG TCGTGTACTG GGAGCCGGCC
TGGACTGCGG TCGAGGGGGC CGGTTGGGAC CCGGAGGATC CGAGCTCGGG GAACGCCTGG
GAGAACCAGG CGATGTTCGA CTTCTCCGGA GCGGCGCTGC CCGAGGTCCT CGCCGAGCTG
GGCGCGACGC ACGAGCGATG A
|
|---|
| Protein sequence | MPTHRSPAAS AGAAPGPGRR DAASHGSHGA ATLSRRYLGG LAATGAVLGT GVLLAAPSPE
AEARAAAQPA NPGFAEGLSR WSVSGQSSAA EVRAAGGRPH VLHLEPTPGQ EVAVSQRVVV
GQGGDITLRA LVRAGGDGRA ASLELRNQGR TSHVHVPVTG AEGTWLELAV SAPAARGALD
ITLRVSGVEG AWAQVDELRF TPDLATRTVR GVDLSGVPKN EEHGAVYTTP DGAEPVDPVE
LMGRSGASLG RLRVWVDPAD GYCTPERTVG MARRIRDAGM DVLVDFHYSD TWTDPGAQHV
PAAWVQHDPQ QLEDAVAEHT RSTLTLLRDA GVDVAMVQVG NEINPGMLWP HGQTWDVDPE
DGVEGAQWEN LARFLRAGAG AVAEVFPAAE VMLHLTNLQD GIEGLTWWLD EAVSREVPLD
VIGLSYYPYW HGTLADLQEA VTTLGTRYER DVIVVETAYP FTLEDDPRAP FPNIVDAETD
LPEGYPPTPD GQAAFFRAVQ DVTVAAEGRR GRGVVYWEPA WTAVEGAGWD PEDPSSGNAW
ENQAMFDFSG AALPEVLAEL GATHER
|
|---|
| |