Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apre_1642 |
Symbol | |
ID | 8398454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anaerococcus prevotii DSM 20548 |
Kingdom | Bacteria |
Replicon accession | NC_013171 |
Strand | - |
Start bp | 1784272 |
End bp | 1785303 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644996006 |
Product | RNA polymerase, sigma 32 subunit, RpoH |
Protein accession | YP_003153384 |
Protein GI | 257067128 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000192835 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTGATA AAATGGATAA AATAAATTTA AAAGATAAAA AAACCCTAGA GAAATTACAA GAGTATCTCA ACTCAGAGGA CTTGACCGAA GAGGAGATTA TCTCAATTCT TGAAGGTTTA ACAGAAGAAG AAAAAGACGA GATAATGGAT ATTATATCAG ACGAAGTGGA TGACGATGAT GAAGATGATG ACTTTGAAGA AAGAAAGACA AATGTGTCAA AAGCTTCCAT CATGCCTATA AGCCGCCGTG ATATGATAGA GCTATCAGAC CTTACTAATG AACAAATAGT GGAACAATTC CAAATAGGAA ATCAGAATGC CCTAGCAGCC CTTGTAGAAA AAAACCAAGG ACTTGTTAGA AGTAGGGCCT CATATTTCTT TAGATCTCAC GGAAACGATC TAGACCTAGA GGACTTAGTC CAATCAGGTA TGCTCGGTAT GATTCGTGCG GCAGAAAAGT TCGACCTATC CCTAGGCTAT AAGTTTACAA CCTATGCCTA TAAGTGGATC GATAAGGCCA TAAGAAAGGC CATAAACAAG GAAGGCCACA CTATAAGAAT ACCTGCCGGT AAATACCTAA AACTTAATAA GCTTAAGCAA ATTCTTAAAG CAAATCCAGA AGCAAGCGAT GAGGAGCTTT ATAGGATTTT GGAAAAGGAG GGAATCGATA AGAAACAAGC AGACGACCTT TTCCTAATAA ATAGAAACCA AGTAAACTCC ACATCCCTTA ACATCAACTT GGACAGTGAG GATTCGACAG GTGATGAGCT TATGGATATG GTAGGAGATG AGTCAACTCC AGTCGATATG CTAATACTCG AAAAAGACAT GGAAAACTTC CTCCTTAAGG CCCTAGACCA ACTAACAGAT AGGGAAAAGC AAATCATAAT ATTTAGATAT GGACTAGATA ACGAAAAACC TAAGACCCTT GAAGAAATAG GTAAAATCTA CGACTTATCT AGAGAAAGAA TCAGACAAAT TGAAAATCAA GCCTTGGGCA AACTGAAAGA ATTTTCTGAA AGAGAAGAAT AA
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Protein sequence | MGDKMDKINL KDKKTLEKLQ EYLNSEDLTE EEIISILEGL TEEEKDEIMD IISDEVDDDD EDDDFEERKT NVSKASIMPI SRRDMIELSD LTNEQIVEQF QIGNQNALAA LVEKNQGLVR SRASYFFRSH GNDLDLEDLV QSGMLGMIRA AEKFDLSLGY KFTTYAYKWI DKAIRKAINK EGHTIRIPAG KYLKLNKLKQ ILKANPEASD EELYRILEKE GIDKKQADDL FLINRNQVNS TSLNINLDSE DSTGDELMDM VGDESTPVDM LILEKDMENF LLKALDQLTD REKQIIIFRY GLDNEKPKTL EEIGKIYDLS RERIRQIENQ ALGKLKEFSE REE
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