| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_1613 |
|---|
| Symbol | |
|---|
| ID | 8398425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaerococcus prevotii DSM 20548 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013171 |
|---|
| Strand | - |
|---|
| Start bp | 1758522 |
|---|
| End bp | 1759529 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 644995977 |
|---|
| Product | TRAP dicarboxylate transporter- DctP subunit |
|---|
| Protein accession | YP_003153355 |
|---|
| Protein GI | 257067099 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000374954 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGGA GTAAATTATT AACCTTTATA ATATCATTAG TTTTATTATT TTCATTCTCT
TCTTGCGATA ATGATACAAC AGGAAATGGA GGGCAACTTG TAAAAGTGGC TACAGTTGTT
GCTCCTACTC ATCCTGTAAA TATTGCATTT AGGGAAGTGT TTTTACCAAT GATTGAGGAA
GAAACAGGAG GAAGATATAA TGTTCAATTG TATGATTCAG GAAGGCTAGG TGGCGAGAAA
CAACTCTTTG ATTACACTAG ATCAGGTATT ATTGAGATTA CAGCCGTTGG TACTGTAATG
TGGTCTGAGA TTGAAATGAT GGCTACTCCT GACTTTCCTT TTATTTTTAG AAATGTGAGT
CACGCAAGAA AAGTTTATGA AGGAGAAATA GGAGACGAAA TCGCACAATA TTTAGAAGAT
AGGGAACCTC TTGAGTTCAT GGCCTGGGCT CCAAATGGTG CAAGGGTTTT CTCATCTTCA
AAGGATTTAA AATCAATTGA TGATTTTAAG GGACAAAAGT TAAGAATGCC TAATAACCCT
ATACATGTGA AGTTAGCTGA ATCACTAGGA GCTAATGTTG TAATAATGGA TATGAGCGAA
GTATTTACTT CTCTTGAACA AGGAGTAATA GAGGGTCAGG ATAATCCTTT GTCAACGTTT
AGACAAGAGG GATGGTATAC AGTTTCTAAA GATATATATG AAACAAATCA CATGGTATCG
TCTATTGAAA TATTAGGTAA TGATGAGTTT CTAGAAAGTT TGCCAGAAGA AGATAGAAAA
GTTTTTGAGA AAGCAGCGAA ATTAACAGCT CAGAGGGCTT GGGATATATA TGAACAAAGT
ATAGAAGATG ATAAAATATT TTTAAAAGAG CAAGGAATAA ATATTACCGA ACCAAGCGAA
GAAGAGTATA AGAAAATGAG AGAAATGGCT AAACCAGTTT ATGACTACCT ATATGATAAG
TATGACTGGG CAGAAGATCT TGTTGAAAGA ATTCAGGAAG TAAAATAG
|
|---|
| Protein sequence | MKRSKLLTFI ISLVLLFSFS SCDNDTTGNG GQLVKVATVV APTHPVNIAF REVFLPMIEE
ETGGRYNVQL YDSGRLGGEK QLFDYTRSGI IEITAVGTVM WSEIEMMATP DFPFIFRNVS
HARKVYEGEI GDEIAQYLED REPLEFMAWA PNGARVFSSS KDLKSIDDFK GQKLRMPNNP
IHVKLAESLG ANVVIMDMSE VFTSLEQGVI EGQDNPLSTF RQEGWYTVSK DIYETNHMVS
SIEILGNDEF LESLPEEDRK VFEKAAKLTA QRAWDIYEQS IEDDKIFLKE QGINITEPSE
EEYKKMREMA KPVYDYLYDK YDWAEDLVER IQEVK
|
|---|
| |