Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apre_1135 |
Symbol | |
ID | 8397923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anaerococcus prevotii DSM 20548 |
Kingdom | Bacteria |
Replicon accession | NC_013171 |
Strand | - |
Start bp | 1219236 |
End bp | 1221044 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644995481 |
Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
Protein accession | YP_003152882 |
Protein GI | 257066626 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00130789 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAGCG ATGACAGTAA GTTGCTCGAT GATGATGTTC TAAAAGAAAT AATAGAAGAA TTTCAGTCTA TGAGCGAGTC TCAAGATGGA TTGATTACCT ATTCTCAGAT AAATACATTC GAAAACTTCA AGGAAATGGA AGATGAGAGC AAGAAGTTTG TTATAAATCA GATTATAAGT TTAGGCATAG AAATCGTTGA AAAATCTGAA ACAGTCCTTG AAGAAGATGA AGAAGCGGAT GATTTAGATG ATGAAATAGA TGATGACGAC GAAGACGATA TCGACGAGAA GAAGATAGAA GAAGATATCA AGAAATCTGT GGATATTATG GCTGGAGTCA AGGTTGATGA CCCTGTAAAG ATGTATCTTA AGGAAATAGG CAAGGTAGAC CTTCTTACAG CGACAGAAGA AATAATACTC GCTCGTAGGA TGGAAATGGG AGAGATTGCA AGGAAGAAAC TCGAAGGAGT TAAGTTTAAC AAGCAAAACA AGACCAAACT CGCCAATGAT ATCTTCTTCG GAGATCTAGC CAAGATACTC AAAGTATCCA ATGAAAAGAT TGTAGAAAAT GGAAGTCTTG ATAAGAAAAG CTACGAAGAG ATAAGAGGGC TTATCAGCAT GGGCGATCTT TTTAGAGAAA TTATGGACAA AGATATGGAT AAAGAAGCCC TAGAGGAACT CAAAGCAAGG GTTTTGATTT GTAATATAGC AGAAAATGCT GTAAGCGACA ATGTCTTAGA TAGAAGTGAG GCCAATTCTC TTTGTGATCT TTTTGATTCA TTTGACCATA TGCTTAACAT TACCGAGTCA GATGAGATAG TTAATTTAAT CTATTTATCA TTTAATGATA TCCTATCAAA GGCTGCCAAT AAGGAACATA TCAAGACAAA CGATAGTATG ATTCTAGAAG ATTTCATAAT TACTAGCCAG AGGGCTAAGA AGATTTCTGA AAACATAGCC TTAGATAAAG ATGAGCTAAT GGAGATAGAA GAAACTATCG CCCTAAGAGA TCTTGCCTAC AAAGTGATAA ATGACGAAGA CTTAAGCGAT GAAGATATAC TAGATTTAAG AAGAGCTGTT CTTAATTCTA AAAGAGCTAA AAAGAAACTT GCAGAAACTA ACCTTAGACT TGTAGTTTCT ATTGCCAAAA AATATGTCGG TCGTGGCATG AGCTTTTTAG ACCTTATCCA AGAAGGAAAC ATGGGACTTA TGAAGGCAGT TGATAAGTAC GACTACAACA GGGGCTTCAA GTTCTCAACT TATGCGACCT GGTGGATTAG ACAGGCTATT ACTCGTGCTA TAGCAGATCA GGCAAGGACT ATAAGAATTC CAGTTCACAT GGTAGAAACA ATAAACAAAC TCGTAAGAAT CCAAAGGCAG CTAGTTCAGG ATTTGGGTAG GGATCCTTCC AATGAAGAGA TTGCCGAGCA GATGGGACTA GAAGTAGAGA AGGTTCAAGA GATAAGAAAA ATATCCCAAG AACCAGTTTC CTTGGAAACT CCAATAGGAG AAGAGGACGA CTCCCACTTA GGAGATTTTA TAGAAGATGA TAGTGCGATC GACCCTGGTG AAGCTGCAAA CTACACTATG CTCCGTGAGC AATTAAACGA TGTTTTATCT TGCTTGGGTG CTAGGGAAAA ACGTGTCCTC CAATTAAGGT TTGGCCTAAT CGATGGAACA CCAAGGACCC TCGAAGAAGT AGGCAAGGAA TTTGACGTAA CTAGGGAGAG GATAAGACAA ATAGAGGCCA AGGCCCTAAG AAAGCTTAAA TCTCCGAACA AGAGTGAATT ATTGAAAGAT TTTTTATAA
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Protein sequence | MTSDDSKLLD DDVLKEIIEE FQSMSESQDG LITYSQINTF ENFKEMEDES KKFVINQIIS LGIEIVEKSE TVLEEDEEAD DLDDEIDDDD EDDIDEKKIE EDIKKSVDIM AGVKVDDPVK MYLKEIGKVD LLTATEEIIL ARRMEMGEIA RKKLEGVKFN KQNKTKLAND IFFGDLAKIL KVSNEKIVEN GSLDKKSYEE IRGLISMGDL FREIMDKDMD KEALEELKAR VLICNIAENA VSDNVLDRSE ANSLCDLFDS FDHMLNITES DEIVNLIYLS FNDILSKAAN KEHIKTNDSM ILEDFIITSQ RAKKISENIA LDKDELMEIE ETIALRDLAY KVINDEDLSD EDILDLRRAV LNSKRAKKKL AETNLRLVVS IAKKYVGRGM SFLDLIQEGN MGLMKAVDKY DYNRGFKFST YATWWIRQAI TRAIADQART IRIPVHMVET INKLVRIQRQ LVQDLGRDPS NEEIAEQMGL EVEKVQEIRK ISQEPVSLET PIGEEDDSHL GDFIEDDSAI DPGEAANYTM LREQLNDVLS CLGAREKRVL QLRFGLIDGT PRTLEEVGKE FDVTRERIRQ IEAKALRKLK SPNKSELLKD FL
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