| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_0678 |
|---|
| Symbol | |
|---|
| ID | 8397459 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaerococcus prevotii DSM 20548 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013171 |
|---|
| Strand | + |
|---|
| Start bp | 776332 |
|---|
| End bp | 777579 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 644995033 |
|---|
| Product | RNA methyltransferase, TrmA family |
|---|
| Protein accession | YP_003152438 |
|---|
| Protein GI | 257066182 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCATCA AAGATATTAA GATAATTGAT ATCCTACAAG ACGGCAGAGG AGTTGGCAAG
AAAGATTCAA AAGTATACTT TATAGAAGGA GCAACTTTTG GAGAATCTTG CGACATTGAA
ATAATAAAAG AAAAGAAAAA TTTCATAGAA GCAAGAAAAG TCAAAACAAC TTCTCAAAGT
CCGTATTATA CACAACCTCC ATGTCCATAT TATTATGAAT GTGGGGGTTG TACTATTATG
GATATAAATT ATGATGAGCA AATTAAATTA AAGAAAAATC TAATCACAAA GGCAATCAAG
AAAACTTGTG CCATAGAAAT AGACGATTTA GAAATAATTA CAAGCGAAAC TCTCTCTTAC
AGGAACAAAA TAAGACTACA AGTAGACAAG AAGGGAAGGC TTTCCTATAA CAAGAAATCC
TCAAATGACC TAGTAGAAAT CAAAGATTGC CTCCTTGCCA ATGAGCATAT AATAGAAAAT
TTAGGAAAAA TTCAAAATCT AGTCACTACT ATAGTTAAAG ACCTTGGCAA TATAATAAGA
GAAATAAGCA TAAGAAGTAA TTCCTGCGAA ATCCTTTTAA ACATTTATAG TAAAGAAGAA
GAAAAACTAT ATAAATATCT AAAAGAAAAT CATAAGGACC TTCCATATAA TATTAATATA
ATAAACAAAA AGAAAATAAA AACCCTAGGT AAAGACCATC TCATATTCAA AGTGAAAGAT
AAATCCTTTA AGGTATCGAA AGATGACTTC TACCAAGTAA ATGATTATCA AATAGAAAAC
CTATATCAAA ATGCAAGAAA ATACCTAGAA AAGAACAAAA AGCTCCTAGA CCTTTTCTGC
GGATCAGGAA TATCATCAAT CGCCCTAAAT GATGATAATA TAGTTGGAAT AGAAATCAAC
AAAAGTGCCA TCAAAGATGC TAAAGAAAAT GCCAAAATAA ACAATTTAAC AGACTACAAA
TTCATCGACA AAAACGCCAA TTACATTGAC CAGAAATTTA TAGAAAAAGA AAAAATACAA
ACAGTAACAG TAGATCCACC AAGGGCAGGC CTAGACAAAG AAATAATTAA GACGCTAGCC
AAAACGAAAA TAAAAAACAT AATCTACATC TCCTGCAACC CCCAAACCCT CGCAAGAGAT
ATCAAAAGAT TTATGGACAG GGGATATGAA CTAAAAGAAA TAAAAGCAGT GGATATGTTC
CCGCAGACTA TGCATGTGGA AGCTATAGCG TTGATACAAA AGATGTAA
|
|---|
| Protein sequence | MIIKDIKIID ILQDGRGVGK KDSKVYFIEG ATFGESCDIE IIKEKKNFIE ARKVKTTSQS
PYYTQPPCPY YYECGGCTIM DINYDEQIKL KKNLITKAIK KTCAIEIDDL EIITSETLSY
RNKIRLQVDK KGRLSYNKKS SNDLVEIKDC LLANEHIIEN LGKIQNLVTT IVKDLGNIIR
EISIRSNSCE ILLNIYSKEE EKLYKYLKEN HKDLPYNINI INKKKIKTLG KDHLIFKVKD
KSFKVSKDDF YQVNDYQIEN LYQNARKYLE KNKKLLDLFC GSGISSIALN DDNIVGIEIN
KSAIKDAKEN AKINNLTDYK FIDKNANYID QKFIEKEKIQ TVTVDPPRAG LDKEIIKTLA
KTKIKNIIYI SCNPQTLARD IKRFMDRGYE LKEIKAVDMF PQTMHVEAIA LIQKM
|
|---|
| |