| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_0520 |
|---|
| Symbol | |
|---|
| ID | 8397297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaerococcus prevotii DSM 20548 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013171 |
|---|
| Strand | + |
|---|
| Start bp | 597139 |
|---|
| End bp | 598254 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644994879 |
|---|
| Product | nuclease SbcCD, D subunit |
|---|
| Protein accession | YP_003152288 |
|---|
| Protein GI | 257066032 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0420] DNA repair exonuclease |
|---|
| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGACTCC TCCACCTATC AGACCTACAT CTAGGAAAAA ATATCGGTTC GTATTTCCTA
ATCGAAGAGC AAGGCTTTGC TCTAGCTGAG ATTATCAAAA TTATAAAAGA AGAAGATGTC
GATATAGTGA TGATTGCAGG AGATATCTTC GATACTATTA TTCCAAGTGC GGAGGCCATG
GATCTTTATT CTAACTTTAT CGAAGAGATA GTTTTTGATT TAGGAAAGAA GGTCCTAGCT
GTTTCTGGCA ATCACGATTC ATCTAAGAGA CTTGATATCA ACAAGAGATT CTACAGGTCC
AATAATTATT ATCTAGTAAG CGAATATGAC AAAGATCCTA TTAGCTTTGA GGATGATTTT
GGGAAAGTTA ACTTCTATCT CATTCCCTTT ATTTCCATAA ATAAGGCGAA AACAATCTTT
GATTCATCAA TAGATAATTT CACCGATGTC TATAAATATG CCCTAGAAGC TATTGACTAT
AGGGATAGGA ATGTGCTTAT TACTCATTGC TACGCTTCAA ATATGAGTTC ATTTGACAAA
GAAGTCTATG ACGAAGGTCA AAAGCCTCTT ACTATCGGAG GAACTGACGC CATGGATGCA
AGTTTATTTG AAGGCTTCGA CTATGTAGCC CTGGGCCATC TTCATAGGGC TCACTACGTC
TTAGACCCTA AGATCAGATA TTCAGGGACC TTTATGAAAT ATTCCTTCGA TGAGGAAAAT
CTTACAAAAA CTGTAAGCCT AGTTGACCTT AAAGATAAGG CAGAAATAAG AAAAATCGAA
ATCCCCTTCT TGAGGGACTT TGTTACAAAA AGGGGAATGT TTGAAGAAAT CTTAAAGGAA
GAAAAGTCAG AGGATTATAT AAAATTTATC CTAGAAGATT CCTATATTCA CGAAAATGCC
ATGGCAAGGT TAAAGGAGAA ATTCCCTAGG GCTGTCTCAA TCACTTACGC CAACAAGGCT
GTATTTGAGA GGGAAGATAG TTACGATGTG GACATAGATG ACAAGAATTT GCTAGAGCTT
TTTGCAGAAT TTTATCACTT CAAGATGGAT GAAGACCTTA AACAAAAAGA CACCCAACTT
ATACAAAGGA TAGGCTTATG CGACCAAGAA GACTAA
|
|---|
| Protein sequence | MRLLHLSDLH LGKNIGSYFL IEEQGFALAE IIKIIKEEDV DIVMIAGDIF DTIIPSAEAM
DLYSNFIEEI VFDLGKKVLA VSGNHDSSKR LDINKRFYRS NNYYLVSEYD KDPISFEDDF
GKVNFYLIPF ISINKAKTIF DSSIDNFTDV YKYALEAIDY RDRNVLITHC YASNMSSFDK
EVYDEGQKPL TIGGTDAMDA SLFEGFDYVA LGHLHRAHYV LDPKIRYSGT FMKYSFDEEN
LTKTVSLVDL KDKAEIRKIE IPFLRDFVTK RGMFEEILKE EKSEDYIKFI LEDSYIHENA
MARLKEKFPR AVSITYANKA VFEREDSYDV DIDDKNLLEL FAEFYHFKMD EDLKQKDTQL
IQRIGLCDQE D
|
|---|
| |