Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apre_0009 |
Symbol | |
ID | 8396756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anaerococcus prevotii DSM 20548 |
Kingdom | Bacteria |
Replicon accession | NC_013171 |
Strand | + |
Start bp | 9254 |
End bp | 10021 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 644994346 |
Product | RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily |
Protein accession | YP_003151785 |
Protein GI | 257065529 |
COG category | [K] Transcription |
COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02980] RNA polymerase sigma-70 factor, sigma-B/F/G subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000000498773 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTAAGT CAAGCAAACA AGAGCACAAA GAGGCCATTC AAGAAAAATT CGAAGAGTAT TACCAAACTC GCGACTTAAA ACTTAGGGAT GAGCTTATCA AAGAGCATAT GTATATAGTC GATATCCTAT CCAACAAATA CGTGGGAAAG GGAATCGAAA AAGATGATCT CTACCAAGTC GCAAGCTTAG GCTTGATCTA CGCTGTAGAA AGATACGACC CAACCAAGGG TTATGCCTTC TCATCCTTTG CAACCCCAAC CATAATGGGA GAGCTTAAGA GATACTTCAG GGATAAGGGC TGGGTAATAA GAGTTCCTCG AAGGATCCAG AATCTTTACA AAAAGATCAA TACAGCCAAG AAAATCCTCC CTCAAGAGCT TCAAAGAACC CCAACCATAG CCGACATCGC TGACTATTTG GGAGAAGATG AGGAGACAAT ACTCGAGACT ATGGAAGCAA GCAAGGTCTA TACTCCTCAA TCCTTGGACA TGAAATATCA GGTCCAAAAG GGAGAAAACG CCATCGACTT ATCGGATATG ATTGGAGAAG AAGATAAGAA CTTCGACTCA ATCGAGCTAA AAGATTTAAT TGATAAGTCC AAAGAAAGAC TAAACGACCT AGAAAAAGAA ATCCTAGAAC TCAGATACTA CGAAGGAAGA ACCCAGGTAG ACATAGCAAA TACCTTGGAC ATAAGCCAGA TGACAGTATC AAGAATTGAG AAAAAAATAT TACAAAAATT CAGCATAGAA TTAGAAAAGA TGAAATAA
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Protein sequence | MSKSSKQEHK EAIQEKFEEY YQTRDLKLRD ELIKEHMYIV DILSNKYVGK GIEKDDLYQV ASLGLIYAVE RYDPTKGYAF SSFATPTIMG ELKRYFRDKG WVIRVPRRIQ NLYKKINTAK KILPQELQRT PTIADIADYL GEDEETILET MEASKVYTPQ SLDMKYQVQK GENAIDLSDM IGEEDKNFDS IELKDLIDKS KERLNDLEKE ILELRYYEGR TQVDIANTLD ISQMTVSRIE KKILQKFSIE LEKMK
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