| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apre_0002 |
|---|
| Symbol | |
|---|
| ID | 8396749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaerococcus prevotii DSM 20548 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013171 |
|---|
| Strand | + |
|---|
| Start bp | 1858 |
|---|
| End bp | 2970 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 644994339 |
|---|
| Product | DNA polymerase III, beta subunit |
|---|
| Protein accession | YP_003151778 |
|---|
| Protein GI | 257065522 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA AAATCAACCA GCAAGATTTA ATGAACGCTA TTACCATTGC TATGAAAGCA
GTCTCAAAGA GTACCAATAT ACAGATACAT GAATTAATAT ACTTTGAGTG TTCTGCTAGC
TCTCTTTCAC TAAGAGCCTT TGATGGAGAA ATATCTATAA AAACAAAAGT TGATGCCGTA
GTAGATGAAG AAGGAGAAAT GGCAGTAAAG GCGAGTCTAA TCTCCAATAT AGTAAGAAAA
CTTCCAAACG ACATAGTTAT AATAGAAAAC AAAAATGGCA AGATCTCTAT CAAATGTTCA
TCTTCAAGCT TTAACCTCAT AGCCTTCGAC TATTATGATA AAAATGATAT TAACATTCCA
GAAACTAAGC CAATAGAAAT AGCTAATGAT ATCCTCAAAA GATCCATAGG CCAGACCGAG
TTTGCTACAA GTCTAGATGA GACCAAGCTT GCTCTAACAG GAATATTATT TGAACTAAAA
GAAGGATACG TCAATATGGT GGCTCTCGAT GGCTACAGGG TTTCCCTAAA GAAGATAAAA
CTCGATTATC CAACAGACTA TGAGGATAGT GAATATATCA TACCTAAGAG GTCCCTACTA
GAATGGTCTA GGATTGTTTC AGATGATTTG ACAACTAAGC TATACAAGAA TGAAAATGAC
CTAATATTTA CAAGCGGTAG CACTACCATG CAATGCAAGG TAATTGATAA AAACTTTATC
GACTATAGAA ATATAATAAA TGATATTTCT GAAACTAGCG TTATTCTAGA CAAAAGAGAC
TTGATCAATT CCCTAGATCG TGCCCAAGTC TTATCAGATC CAGGTAGGGC GAACCTTATT
AAAATCGAGC TTTCAGATAA TGTTATGCTT ATAAAGTCAA ACTCAGAGAT AGGGGATGTC
AGGGAAGCTA TAGATGTAGA GCAAAAGGGA AATGATCTGG AGATAGCTTT TAATGCTAGA
TATATGCAAG AAGGGGTAAA GGCTTGTGAT TCATCAAAGA TAAAGCTAAA CTTCAAATCA
TCCCTAAATC CATGCCTAAT ATATCCAGAA AACTCAAGCT ACGAAGATGA GGACTTTACC
TACCTAGTTC TTCCAGTAAG ACTTGCGAAT TGA
|
|---|
| Protein sequence | MKFKINQQDL MNAITIAMKA VSKSTNIQIH ELIYFECSAS SLSLRAFDGE ISIKTKVDAV
VDEEGEMAVK ASLISNIVRK LPNDIVIIEN KNGKISIKCS SSSFNLIAFD YYDKNDINIP
ETKPIEIAND ILKRSIGQTE FATSLDETKL ALTGILFELK EGYVNMVALD GYRVSLKKIK
LDYPTDYEDS EYIIPKRSLL EWSRIVSDDL TTKLYKNEND LIFTSGSTTM QCKVIDKNFI
DYRNIINDIS ETSVILDKRD LINSLDRAQV LSDPGRANLI KIELSDNVML IKSNSEIGDV
REAIDVEQKG NDLEIAFNAR YMQEGVKACD SSKIKLNFKS SLNPCLIYPE NSSYEDEDFT
YLVLPVRLAN
|
|---|
| |