Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ccur_01370 |
Symbol | |
ID | 8374345 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cryptobacterium curtum DSM 15641 |
Kingdom | Bacteria |
Replicon accession | NC_013170 |
Strand | + |
Start bp | 170638 |
End bp | 174261 |
Gene Length | 3624 bp |
Protein Length | 1207 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644993061 |
Product | putative collagen-binding protein |
Protein accession | YP_003150552 |
Protein GI | 256826593 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4932] Predicted outer membrane protein |
TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0900922 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 114 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGTTTTG GGTGGGTAAT ACGATGCAGG TGGCGAATTG CGTTAGCGGG GGCACTTATC TGTGCGCTTG CATGTTGCGG TTGCTTTTTC GTCTTTCACA CGACGTTAGA GCAAGCGTTT GCTTCAGAGA GTGCTTCGCT TGAGGTAGGG GCCGATATCT TCTATGGTGG CTATAGCACG AATTGGCTTT CCGTCGAGGG CAGCATGGCG TATTGCGCTC ATCCAGAAAA GCAGACGCCG CCTGCCGGTT CGTATGAAAA ACAGGAGATA GTCGCCACAA ATGGGCGCAC CGATGAAGTA CGTGCCGATC TATGGTTTGG GTTTGGTGGT CCTGGTTTTG ACGCTTCCTG GTGGCCTACT ACCTGGTACG ACGGAAGCGC GATGACCGAC GAGCGCTATG CTGCTTTAAC ACATATTATT GTGGCAGAGG CGTATAACGA CAGCGCTATT GCGGCACTTA AGGGCACCTC GCAGCAATTT CGCACATGGG CCCGCGCTGA GGTGCTCGGA TACGACGAAG AAGGTCTTGT CTCCAACGAG CAAGCGACTG CACGCATTAT AGCTGCTCAT CTGCACGATG TGCCGTCGGC GTTTACTACC TTTGCCCTTC ATACGGGCTC TTCGACACAG GATATCGTTT CATTTGCGCC GGTTGGTTCT CTCGAGCTGC ATAAGATTTC ATCGCATGAG TCAGTGAGCG CTGGCAATCC TTGCTACAGC TTAGAGGGTG CCACCTATGA AGTACGTGCG GCATCGGGTG AAGTAGTGGG AACGCTCACG ACCGATGCAG ACGGATATGC GCACCTCGAG GGTCTTTTGG CAGGATCGTA TACTGTCAAA GAAACAACTC CATCAAAAGG CATGGCGCTC GATAGAAGCG AATATTCCGT TGAAGTAGTT TCAGGGTCAA CCACTTTGGT TAACGGATCA ACGGTATCGG ACACCCCTCA AATGAACCCG ATTGAGATCG CGCTTCGCAA GGTTGACTCA TCAATGGGGG CGGGTCTATC GCAAGGGGCA GCTACGCTTG CGCATGCGCG GTTTTCTTTC CAATATTATG CAGGCTTCTT TGATACCGCC GATGCCGCCC GTGCTTCGGG TGTCCCATTA CGTTCATGGG TGTTTGAAAC CGACAGCGAG GGAGTGTGCC GCTACCGCAC GGATGACCAG GTAGAGGGGG ATGCGCTCTA TACCGACGAA AACGGCACCG AAGCACTGCC GCTTGGTACC GTTGTTATCG AAGAAGTGAA GGCGCCGTTG GGTTATGTAT TACCGAGCGA AGCACAGCGT ACCTTCTGCG TGCAGATTAC GTCTGATGGG GTCGATTCGC ATGTGTCTTC ATTTGCGGCG CCTGCCTGTC CTGAACAACC GATCCGTGGC GATTTCCGTC TGATTAAAGA AGCCCCAACT GCGCTTTCTG ACAACCCGCA AGAACAGCAG CGCGTGCTGG TGGAAGGGGT GCTCTTTCAG GTCATCAACG ACAACGAACA GCCCGTCATC TCCCCAGAAA CAGGAGCTCT CTGTCAGACT GGCGAAGTGG TGTGCACCAT CAAAACTGAT GAATCCGGTC AGGCTTCGAC CAGGGCATCT GAAACAAACG GTTGGGCAAC ACCAGCGGGG TGGACGGGTG CTCTACCGTT TGGCACCTAT CGAATTCATG AGGTAATACC CAATCAAACG GCCGATCGTT TTAAAGCTAA GTATGGGAAA ACGCTGCTTA CCGTACCTGA CTGGAAGGTA TCAATCCAAT CGGACGGTGC ATGGGATCCA CCCACGTTAG TGCTTGACCG CATTCCGCAG ACACCGTTGC GTATTGAAAA GGTCGATGCG GAATCGGGTA AGCGTATTCC ACTGCCGTGT ACGTTCTCGC TGTACAAGGA AGATGGGCGC GTTGTTGAGT ATATCGATCG CACGACGGGA CAGAGTAAAT CCGAGTGGAC AACAAACGAC GCGGGCGAGA TCCAGTTGCC CATGCTGCTT GAAGAGGGAA TATACGAACT TCATGAGATA CAGGCTCCTG AGGGATACTT GATTAATAAA GAACCAATCC GTTTTGATGT ACAGGGATTT CGCGATTGGG ATAATCCACT GACGGTAACC TGCGTTGACA ACCAACCGCG CGCTCGCTTG CGTGTTGTCA AAACCGATTC TGATACTGGA CAGGTGGTTG CCGGGGCAAC CTATCGACTA AAGGCACAAA AAGATATTGT TTCAGCTGAT GGAACCATAC ACGCTAATGC TGGTGACGAA ATAGGTCAGA TGGCAACAGA CAGTCAGGGT GTCGCCATAT TCGATGGTTT ACGCCTAGGC TCTTATGCAG TTGAAGAGGT AGCTCCCGCT GCGGGTTATG CACGGGATAC AGCCATAAAG ACGGTTGAAC TTGCATATGC GGGGCAAGAG ACAGCGTTGG TAGAGACGGA TTGTCCGGTA ACAGACAGTC GTACTCGGGT AATCGTGCGC AAGGTGTCGG CTAAAGATAC CGATAAAGGG TTGCCGCAGG CTCGATTTAG TGTAACGAAA CTCGATTCTG GTACTGTGAC AGAGATAGAG ACAGACGAAA GTGGTAATGC ATCCTTAGAT GGTCTCTCCC CAGGGGTTTA TCGCGTAAAG GAAGAGGCTG CACCGCACGG ATATGCGCTT GATACCGAGC AAGAGCGCAC GTTTACCGTA GACAATCAGG GCTTCGTACA CCTTGATGAA GCTGCGGCAC ATAGTTCTGA GACGACTTCG GTAGAACATG CTCCAGTAGC GCAACTGACC TTGACGTTCT CGAATGAACC CATTGAGCTT GCAAGCGACG CATCTGATCA AGAAAGTGGT TCGCACGAAG GGCAGGCGCG CGCGGAAGCC AGCATTATTG ATGCGGTATC GTATAGCGGT CTTGAAGCAG GCAAGAATTA TCGCCTGGTC GGAACCTTAA TGGATTGCGA GACGGGCGAA GTTCTCTCGA TTAATGGAAT GCCCATTACG GCTGAGACAA CCTTTAGCGC GCAACATTCA TCGGGCAGTG TCGAGACAGT TTTCTCGTTC GATGCAAGTG GACTTGCCGG TAAGAGTGTT GTTGCCTATG AAACATGCTT TTTAGGCGAT AGTGTTGTTG CTATGCATGA AGATATAGCC GACACGCGAC AGATGGTGCA CTTTATTGAT ATCTCTACTG CAGCACGTGA TGGAGGCTCA GATGGCAGCG GTACGCGATC TGTTATTGAT GCGGTGAGCT ATCGAGGTCT TGAGCCCGGG AAAACGTATC GCATGATCGC CTCGCTGGTT GATGCTGATA GTGCAGCACC CCTTACAGCC CGTGATGGAT TGCCCGCAAC AGGGGAGGCC AGTTTTACTC CTGATGCACC AGACGGATCG GTTGATGTGA CGCTATCAAT ACGCGAACAA GAGGTATCAG GCAAGCGTGC GGTGGTATTC GAGCGTCTAG TTGACGAAAA AGGGCATGTC ATTGCCACAC ATGAAGATAT ACAGAGCGCT GAGCAGACCG TTTCGTTTGT CGATAAGCCA GGCTTTTCTC TGCCGAAAAC AGGTGACTAT CTAATAGGTA TTCTCTGTGT CCTTTCTCTA GCGATTGGTG CAAGTCTCGT TCTTTTTGTT GTGCGTCGGC GGGGTATTCA TTGA
|
Protein sequence | MRFGWVIRCR WRIALAGALI CALACCGCFF VFHTTLEQAF ASESASLEVG ADIFYGGYST NWLSVEGSMA YCAHPEKQTP PAGSYEKQEI VATNGRTDEV RADLWFGFGG PGFDASWWPT TWYDGSAMTD ERYAALTHII VAEAYNDSAI AALKGTSQQF RTWARAEVLG YDEEGLVSNE QATARIIAAH LHDVPSAFTT FALHTGSSTQ DIVSFAPVGS LELHKISSHE SVSAGNPCYS LEGATYEVRA ASGEVVGTLT TDADGYAHLE GLLAGSYTVK ETTPSKGMAL DRSEYSVEVV SGSTTLVNGS TVSDTPQMNP IEIALRKVDS SMGAGLSQGA ATLAHARFSF QYYAGFFDTA DAARASGVPL RSWVFETDSE GVCRYRTDDQ VEGDALYTDE NGTEALPLGT VVIEEVKAPL GYVLPSEAQR TFCVQITSDG VDSHVSSFAA PACPEQPIRG DFRLIKEAPT ALSDNPQEQQ RVLVEGVLFQ VINDNEQPVI SPETGALCQT GEVVCTIKTD ESGQASTRAS ETNGWATPAG WTGALPFGTY RIHEVIPNQT ADRFKAKYGK TLLTVPDWKV SIQSDGAWDP PTLVLDRIPQ TPLRIEKVDA ESGKRIPLPC TFSLYKEDGR VVEYIDRTTG QSKSEWTTND AGEIQLPMLL EEGIYELHEI QAPEGYLINK EPIRFDVQGF RDWDNPLTVT CVDNQPRARL RVVKTDSDTG QVVAGATYRL KAQKDIVSAD GTIHANAGDE IGQMATDSQG VAIFDGLRLG SYAVEEVAPA AGYARDTAIK TVELAYAGQE TALVETDCPV TDSRTRVIVR KVSAKDTDKG LPQARFSVTK LDSGTVTEIE TDESGNASLD GLSPGVYRVK EEAAPHGYAL DTEQERTFTV DNQGFVHLDE AAAHSSETTS VEHAPVAQLT LTFSNEPIEL ASDASDQESG SHEGQARAEA SIIDAVSYSG LEAGKNYRLV GTLMDCETGE VLSINGMPIT AETTFSAQHS SGSVETVFSF DASGLAGKSV VAYETCFLGD SVVAMHEDIA DTRQMVHFID ISTAARDGGS DGSGTRSVID AVSYRGLEPG KTYRMIASLV DADSAAPLTA RDGLPATGEA SFTPDAPDGS VDVTLSIREQ EVSGKRAVVF ERLVDEKGHV IATHEDIQSA EQTVSFVDKP GFSLPKTGDY LIGILCVLSL AIGASLVLFV VRRRGIH
|
| |