| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ksed_26080 |
|---|
| Symbol | |
|---|
| ID | 8374111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Kytococcus sedentarius DSM 20547 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013169 |
|---|
| Strand | - |
|---|
| Start bp | 2675882 |
|---|
| End bp | 2677849 |
|---|
| Gene Length | 1968 bp |
|---|
| Protein Length | 655 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 644992828 |
|---|
| Product | lipid A core-O-antigen ligase-like enyme |
|---|
| Protein accession | YP_003150328 |
|---|
| Protein GI | 256826368 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 61 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCAC CGGACCGTCG CCGCGTGGCG GCCGCCCTGC GCGGGCTCGG GGTCGTGGTG
CTGCTCGCCG TCCTGCCGTT GGTCTCCACC CCGGAGACGC TGGACATCCG GGAGCCCGTC
CGCCGGGTCG CGATCGCCGG CGTCCTGGTC TGCGCGGCCG GCGCCTGGTG GGCCGATCGT
CGTGGGCCGC AGCTCCCGCG GGCCGTGTGG TGGGCGATGG GGGTGGTGGC CCTGGCAGCG
GTGGGCTCCA CGTGGGCCTC GGCGAACTCG TGGCTGTCGG TGGTGGGCCG GTACCCGCGG
GACGAGGGGC TGCTCATGAT CGTGGCCTAC CTGGCCATGT TGCCCGCCGG GGCCGTCCTG
TTCGCCACCG CGGCGGGCCG CCGGCTGGCC GTGTGGACGG CGACGCTCTC GGGCTGGGTG
CTGGTCTGGA TGGGGTTGCG CGACGTGCTC AACGGGCAGA CCCACCGTGT GGTCACCGCC
CTGGGGAACG CCTCGACGGT CGGCATCTGG GGCCTCCTGC TGGCCGCCTG GCTGGGTTGG
GTGGCCTGGC GGGAGCGGTC CCGGGTGGCA CTGGCCGGGG CGTTCGCCGG CGCCGGCCTG
CTGGTGCTGG GCGCCTCGCG CGGGGCCCTG GTCGGGGTGC TCGTGGCGGC GGTGCTCTCG
CTGGTACTGG TGGCGCGCAC CGAGGGCGTG CGACGGGTCC TGGTGCCCGC TGGGCTGATG
GTGGCCGGCG TGGTGGTGGT CCTGGCCCTG CCGATGACGC GTGACCGGAT CTTCCTGGAG
GAGGCCGGCG CGGGCACCAA CATTACGGTG CGCCTGATGA TGTGGCGGCA CACGCTCGCG
CTGGTGGCCG AGGAGCCGGT GCTGGGTCTG GGCCCCTCGC GCTGGGTGGG GGAGACCTCG
GCCGGGTACG GGCCCACCTG GCAGGCAGAG GCCAGCCCCG GCGTGCGCCT CGATGGGGTG
CACAACGTGG TGCTGCAGGT CACCGCCGCC CTCGGGGTGC TCGGGCTGCT GGCGGTGACC
GGCCTGGCCG TGGTGGTCGG GATGGCACTG CTGCGGGCTG CCCTGGGGGC GGTGGCCCCG
GTCCGGCGTG GCCACGACCG CGTGGCCCTG GCCTCATGGC GCTCCGGCCG GGCGACGCGG
CGGGAGAGGG CCCAGGGGCG TGACGCGTTC GCCTCCTGGC CCGCGGCCGC GCTCGCGGTG
GGTGTGGGGA CGGCGGTGGC GCTGATGTTC GCCTACACCG AGCCGGTTTT CGTGGTGCCG
GGTGCTGCCG TGGTGGGGGG CGGCCTCGCC GTCGCCCATG GCGCGGGGGG CGCCGCCGTC
CCCCGTCGCC GCCCCGCACG TCCCCGGGCC CCGGAGGTGC TCCCCGCAGC CCTCACGGCG
GTGGCCACGG TCTCGCTGGT GGCCACCACG CTGGTCTGGG ACGGCTACCG CGACGCACGC
ACGGCGGTGG CGAGCGGTCC GGCCGCCGCC GGACCGCGCC TGCAGCAGGC CGAGCGCATG
GCGCCCTGGG ACCCGAACAT CCCCGTGCGG GCCGCGGGGG CCATGACCAC CCTGGCGGCC
GACAAGGGCG CCTGGCACCG CAGCTGGGGC AACGAGCTCG CGCCGCAGGA CGACGCGCTC
ACCCGGGCGT GCCCCCGCAT CGCGCCCGAC CAGCAGTGCC TGGCCTGGCA GGCGCGCGCC
GCGCTGCAGG CCGGCGATCC TGGACGGGGT GGGCTGCTCA TCCAGCAGGC GGTGTCGATG
GGGCCGGACG ACCACCTCTC CCGCGTGGTC CAGCAGGAGG TTTTGCTGGC GCAGGGAGAC
CCCCCGCAGG CGGTGGCCGC AGCCACGGAC CACGTGGAGC GCAACCCCCA CCTCCACACC
GCGTGGCGGA TGCTGGCCCA CGCCCAGCAG GCCGACGGCG ACCTGGCCGC GGCGCAGCAG
AGCGCCGCCC GCGCGGACCG GGAGCTCGCG GACTTCCAGG CCGGCTAG
|
|---|
| Protein sequence | MDAPDRRRVA AALRGLGVVV LLAVLPLVST PETLDIREPV RRVAIAGVLV CAAGAWWADR
RGPQLPRAVW WAMGVVALAA VGSTWASANS WLSVVGRYPR DEGLLMIVAY LAMLPAGAVL
FATAAGRRLA VWTATLSGWV LVWMGLRDVL NGQTHRVVTA LGNASTVGIW GLLLAAWLGW
VAWRERSRVA LAGAFAGAGL LVLGASRGAL VGVLVAAVLS LVLVARTEGV RRVLVPAGLM
VAGVVVVLAL PMTRDRIFLE EAGAGTNITV RLMMWRHTLA LVAEEPVLGL GPSRWVGETS
AGYGPTWQAE ASPGVRLDGV HNVVLQVTAA LGVLGLLAVT GLAVVVGMAL LRAALGAVAP
VRRGHDRVAL ASWRSGRATR RERAQGRDAF ASWPAAALAV GVGTAVALMF AYTEPVFVVP
GAAVVGGGLA VAHGAGGAAV PRRRPARPRA PEVLPAALTA VATVSLVATT LVWDGYRDAR
TAVASGPAAA GPRLQQAERM APWDPNIPVR AAGAMTTLAA DKGAWHRSWG NELAPQDDAL
TRACPRIAPD QQCLAWQARA ALQAGDPGRG GLLIQQAVSM GPDDHLSRVV QQEVLLAQGD
PPQAVAAATD HVERNPHLHT AWRMLAHAQQ ADGDLAAAQQ SAARADRELA DFQAG
|
|---|
| |