Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ksed_22270 |
Symbol | |
ID | 8373730 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Kytococcus sedentarius DSM 20547 |
Kingdom | Bacteria |
Replicon accession | NC_013169 |
Strand | - |
Start bp | 2307980 |
End bp | 2309212 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644992469 |
Product | arabinose efflux permease family protein |
Protein accession | YP_003149975 |
Protein GI | 256826015 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.00681057 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.389193 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCCGTCG ACCACCGCCC CGCCAACCGC CACCCTGCTG CGTGGGAGGG GCACCTGTCC GGGACGCCGG CCTACCGGCG CATCCACCTA GCGCTGCTCT GCGCCGGGTT GGCCGCCTTC GCGCAGCTCT ACTCACCGCA GGGGGTGCTC CCGCTGCTCG CGGTCGACGT CGGGGTCACC GCCTCCCAGG CCAGCCTGAC CATCTCCGCG GCCACCACCG GCCTAGCGCT CTCGGTGCTG CCGTGGTCCT GGGTGGCCGA CCGGGTGGGA CGCGTGGTCT CCATGCGCAT CGCCCTGGTC GCCGCGACCA CGCTGGGGCT GGTGGTGCCC TGGTGCCCCT GGTTCGAGGT GATGCTGGTG CTGCGGGTGC TCGAAGGAGC GGCCCTCGGT GGCGTGGCCG CGCTGGCGGT GACCTACCTG ACCGAGGAGG TCTCCGCATC GGTCGCGGCT GTGGCGGCTG GCACGTACAT CGCGGGCACC AGCATCGGGG GCCTGGCCGG GCGGGTGGTG GCCGCGCCCG TGGCCGACCT CGCCGGCTGG CGCACCGGCA CCTTCTGCGT CGCGCTGATG GCGGCAGCGT GCACCATCGC GTTCTTCGTC CTCACCCCAC CGGCCCGCGG CTTCCGCCCC CGCCAGCCGT CGGTGTGGAC CATCGCCCGC ACGGTGGTGG ACCACCACCG GAACCCGGCA CTCGTCGCCA CCTTCATGCA GGCCTTCCTG CTGATGGGGG CCTTCGTCGC CGTGTACAAC TACCTCACCT TCCGGCTGGA GCTGCCCCCG TACTCCCTGC CCGTCGGTGT GGCGAGCCTG GTCTTCCTGG CCTACCTGGC GGGGACGGCG GCCTCCCGCA TCGCCGGGGG GCTGGCGACG CGGCGCGGGC GGCGCGGTGT GCTGCTCGTC TCGGTGGGTG TGATGGGGGC TGGCGCCCTG GTGACCCTGC ACCCCTCGCT CGTCCTGGTG GTGGTGGGAC TGGTGGTGCT GACCGCGGGC TTCTTTGGGG TGCACGGTGT GGCCTCTGGG TGGGCGGGGG CGCTGCCGGA GCACGGGCGG TCGCAGGCCA CCAGCCTGTA CACCTTCTGG TACTACGCCG GGTCGAGCCT GTTCGGGTAC CTCGGCGGGT TCGCGTGGAC GGCGACGGGG TGGCCGGGGG TGGTGCTGGG AGTGGTCGGT CTGACCGCCG TGGCGGGGGT ATGGGCCGTG ATCTCCTTGC CCGGCGCTAG TCTGCGCTCA TGA
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Protein sequence | MPVDHRPANR HPAAWEGHLS GTPAYRRIHL ALLCAGLAAF AQLYSPQGVL PLLAVDVGVT ASQASLTISA ATTGLALSVL PWSWVADRVG RVVSMRIALV AATTLGLVVP WCPWFEVMLV LRVLEGAALG GVAALAVTYL TEEVSASVAA VAAGTYIAGT SIGGLAGRVV AAPVADLAGW RTGTFCVALM AAACTIAFFV LTPPARGFRP RQPSVWTIAR TVVDHHRNPA LVATFMQAFL LMGAFVAVYN YLTFRLELPP YSLPVGVASL VFLAYLAGTA ASRIAGGLAT RRGRRGVLLV SVGVMGAGAL VTLHPSLVLV VVGLVVLTAG FFGVHGVASG WAGALPEHGR SQATSLYTFW YYAGSSLFGY LGGFAWTATG WPGVVLGVVG LTAVAGVWAV ISLPGASLRS
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