Gene Ksed_22270 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_22270 
Symbol 
ID8373730 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp2307980 
End bp2309212 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content73% 
IMG OID644992469 
Productarabinose efflux permease family protein 
Protein accessionYP_003149975 
Protein GI256826015 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.00681057 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.389193 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCCGTCG ACCACCGCCC CGCCAACCGC CACCCTGCTG CGTGGGAGGG GCACCTGTCC 
GGGACGCCGG CCTACCGGCG CATCCACCTA GCGCTGCTCT GCGCCGGGTT GGCCGCCTTC
GCGCAGCTCT ACTCACCGCA GGGGGTGCTC CCGCTGCTCG CGGTCGACGT CGGGGTCACC
GCCTCCCAGG CCAGCCTGAC CATCTCCGCG GCCACCACCG GCCTAGCGCT CTCGGTGCTG
CCGTGGTCCT GGGTGGCCGA CCGGGTGGGA CGCGTGGTCT CCATGCGCAT CGCCCTGGTC
GCCGCGACCA CGCTGGGGCT GGTGGTGCCC TGGTGCCCCT GGTTCGAGGT GATGCTGGTG
CTGCGGGTGC TCGAAGGAGC GGCCCTCGGT GGCGTGGCCG CGCTGGCGGT GACCTACCTG
ACCGAGGAGG TCTCCGCATC GGTCGCGGCT GTGGCGGCTG GCACGTACAT CGCGGGCACC
AGCATCGGGG GCCTGGCCGG GCGGGTGGTG GCCGCGCCCG TGGCCGACCT CGCCGGCTGG
CGCACCGGCA CCTTCTGCGT CGCGCTGATG GCGGCAGCGT GCACCATCGC GTTCTTCGTC
CTCACCCCAC CGGCCCGCGG CTTCCGCCCC CGCCAGCCGT CGGTGTGGAC CATCGCCCGC
ACGGTGGTGG ACCACCACCG GAACCCGGCA CTCGTCGCCA CCTTCATGCA GGCCTTCCTG
CTGATGGGGG CCTTCGTCGC CGTGTACAAC TACCTCACCT TCCGGCTGGA GCTGCCCCCG
TACTCCCTGC CCGTCGGTGT GGCGAGCCTG GTCTTCCTGG CCTACCTGGC GGGGACGGCG
GCCTCCCGCA TCGCCGGGGG GCTGGCGACG CGGCGCGGGC GGCGCGGTGT GCTGCTCGTC
TCGGTGGGTG TGATGGGGGC TGGCGCCCTG GTGACCCTGC ACCCCTCGCT CGTCCTGGTG
GTGGTGGGAC TGGTGGTGCT GACCGCGGGC TTCTTTGGGG TGCACGGTGT GGCCTCTGGG
TGGGCGGGGG CGCTGCCGGA GCACGGGCGG TCGCAGGCCA CCAGCCTGTA CACCTTCTGG
TACTACGCCG GGTCGAGCCT GTTCGGGTAC CTCGGCGGGT TCGCGTGGAC GGCGACGGGG
TGGCCGGGGG TGGTGCTGGG AGTGGTCGGT CTGACCGCCG TGGCGGGGGT ATGGGCCGTG
ATCTCCTTGC CCGGCGCTAG TCTGCGCTCA TGA
 
Protein sequence
MPVDHRPANR HPAAWEGHLS GTPAYRRIHL ALLCAGLAAF AQLYSPQGVL PLLAVDVGVT 
ASQASLTISA ATTGLALSVL PWSWVADRVG RVVSMRIALV AATTLGLVVP WCPWFEVMLV
LRVLEGAALG GVAALAVTYL TEEVSASVAA VAAGTYIAGT SIGGLAGRVV AAPVADLAGW
RTGTFCVALM AAACTIAFFV LTPPARGFRP RQPSVWTIAR TVVDHHRNPA LVATFMQAFL
LMGAFVAVYN YLTFRLELPP YSLPVGVASL VFLAYLAGTA ASRIAGGLAT RRGRRGVLLV
SVGVMGAGAL VTLHPSLVLV VVGLVVLTAG FFGVHGVASG WAGALPEHGR SQATSLYTFW
YYAGSSLFGY LGGFAWTATG WPGVVLGVVG LTAVAGVWAV ISLPGASLRS