| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ksed_20400 |
|---|
| Symbol | ispH |
|---|
| ID | 8373544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Kytococcus sedentarius DSM 20547 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013169 |
|---|
| Strand | - |
|---|
| Start bp | 2117894 |
|---|
| End bp | 2118913 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644992289 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_003149799 |
|---|
| Protein GI | 256825839 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.0307247 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.284401 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGATACCC AGACGACCCA AGAGACCAAG CGCGTCCTGC TGGCCGCCCC CCGCGGCTAC
TGCGCCGGCG TCGACCGGGC CGTCGTCACG GTCGAGAAGG CCCTCGAGCT GTACGGCGCA
CCGGTCTACG TCCGCAAGGA GATCGTGCAT AACAAGCACG TGGTGGACAC CCTGCGCCGC
CGGGGTGCGG TGTTCGTGGA GGAGACCGAC GAAGTGCCCG AGGGCGCCAC GGTCATCTTC
TCCGCCCACG GCGTGGCCCC GATCGTGCAC GAGGAGGCCA AGGCTCGCAG CCTGAAGTCC
ATCGACGCGA CCTGCCCGCT GGTCACCAAG GTGCACCGCG AGGCCGTGCG CTTCGCCGAC
GACGACTACG ACATCCTGCT GATCGGCCAC GAGGGGCACG AGGAAGTCGT CGGCACCGCC
GGTGAGGCTC CCGAGCACGT GATCCTCGTG GACGGCCCCG AGGGTGTGAA GGACGTGGAG
GTGCGCGACC CGGAGAAGGT CGTGTGGCTC TCGCAGACCA CCCTGAGCGT GGACGAGACG
ATGGAGACCG TGCGTCTGCT GCGCGAGAAG TTCCCCTCCC TGCAGGACCC GCCGAGCGAC
GACATCTGCT ACGCCACGCA GAACCGCCAG CTGGCCGTGA AGCAGATGGC CCCCGAGCTG
GACCTGATGC TCGTGGTGGG CTCGCGCAAC TCCTCGAACT CGGTCCGCCT CGTGGAGGTG
GCGCTGGAGC ACGGGGCACG GGACGGGTAC CTGGTCGACT ACGCCGCCGA GCTGCAGGAC
GAGTGGTTCG AGGGCGTGGA GACCGTCGGT GTCTCCTCGG GTGCCTCGGT GCCGGAGATC
CTGGTGCGTG ATGTGCTGGA CGACCTCGCC GCCCGCGGCT ACCTCGACGT GGACGTGTTC
ACCGCGGCCG AGGAGAAGAT GCTCTTCCAG CTGCCCGGTG AGCTGCGCCG CGACCTGCGC
GCCTCGGGGA TGGACGACAC CTCCACCGAG ATCCGGCACG ATGCGGGGGC TCTTCCATGA
|
|---|
| Protein sequence | MDTQTTQETK RVLLAAPRGY CAGVDRAVVT VEKALELYGA PVYVRKEIVH NKHVVDTLRR
RGAVFVEETD EVPEGATVIF SAHGVAPIVH EEAKARSLKS IDATCPLVTK VHREAVRFAD
DDYDILLIGH EGHEEVVGTA GEAPEHVILV DGPEGVKDVE VRDPEKVVWL SQTTLSVDET
METVRLLREK FPSLQDPPSD DICYATQNRQ LAVKQMAPEL DLMLVVGSRN SSNSVRLVEV
ALEHGARDGY LVDYAAELQD EWFEGVETVG VSSGASVPEI LVRDVLDDLA ARGYLDVDVF
TAAEEKMLFQ LPGELRRDLR ASGMDDTSTE IRHDAGALP
|
|---|
| |