Gene Ksed_20310 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_20310 
Symbol 
ID8373535 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp2110419 
End bp2111795 
Gene Length1377 bp 
Protein Length458 aa 
Translation table11 
GC content67% 
IMG OID644992281 
Productsite-specific recombinase, DNA invertase Pin 
Protein accessionYP_003149791 
Protein GI256825831 
COG category[L] Replication, recombination and repair 
COG ID[COG1961] Site-specific recombinases, DNA invertase Pin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.0744834 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.198251 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCGCA AGGGCGATCG GTGGACCGTC GATACCCAGC TGCGCAAGAT CAGGGCTCTG 
GCCGAGGCCA AGGACTGGAA CGTGGTCGAG GTCTACGAGG ACAACGCCGT GTCGGCGACG
AAGAAGCGCC GCGCTGGTAC CCGGTGGGCC GAGATGCTGG AGGACGCCCG AGCGGGCCGG
TTCTCAATGG TCGTCGCCGT GGACATGGAC CGCCTCCTGC GCAGCACCAA GGACCTCAAC
ACGTTGATCG ACCTCGGCCT GCGGGTCGTC ACGGTGGACG GCGAGATCGA CCTCTCGACG
GCGGACGGCG AGTTCCGGGC GACGATGCTC GCCGCCCTCG CACGGTTCGA GGCCCGGCGC
AAGGCCGAGC GCCAGATCAG GTCGAATGAG CGCCGCCGCG CAGAAGGCAT TCCCACGTCG
GCCTGGAAAG CGTTCGGCTG GACGCGAGAT GGCGAGTTGA TCCCCGAGGA GGCCGAGGCC
ATCCAGCGGG CGTTCGATGC GTTCCTTGGC GAGCCGTCGC TGTCGATCCG ACGCATCCGC
GAGGACTTGA ACGCAGCCGG CCATCTCACG GCCCGCGGCT CCGAATTCTC CGTTGACGCG
GTGCGCTACC TCCTGGCCAA CCCGCTCTAC GCCGGCTACA TCAAGCACTA CGCGTCAGGC
GAGCTGTACC CGGTCCAGGG CGAGGCGTTC CCGCCCATCG TCGGCGAGCA GACATGGCGG
GCCGCGGTGG CGAAGCTGGA GGACAACGTG CGGAGGTCGG CGAGGCAGGG CAACCAGCCG
AAGTACCTCC TCTCCACGAT CGGGCTGTGC GGGAAGTGCG GCGCGACGCT TGTCTCGGGG
ACGAACAGCC GCAAGCAGCC GACGTACCGT TGCGGCGAGC ATTTCCACCT CACCCGCCAA
CGGGAGCCCC TCGATGCGAT GGTCACCGAG GCGGTGCTCA CTCGCCTGTC CTCGGTGGAC
GTGCACGACC TTGTGATGCC GCAGGAAGAC GCTGGGCCGG ACCGCGAAGA GCTGCTGACT
GAGCGGAACG CCCTGGTCGA GCGCGTCAAG GAGCTGAGCC CGCTGCTGCG CGACATTCAC
CAGCCCGTGC TGGAGATCAC CGCGGCAATC AACGACGTGA AAGCTCGCAT CGACGAGATC
GACGCGGAGC TGCTCGACCG CTCGGTGTCG GTGGCGGCGA AGCTGCTCGA GGACATTGAC
GAGTCGGTCG GCACCGCGGA GCGCCGCGAG GTGGTCGAGT CGAAGTGGAA GGAGTTGGAC
GTGGACCGTC GCCGGATGCT CGTGGACGAG CTGGTGACGG TGACCATCGA GCCCATCGTT
CCTGGTCACG TGAAGTTCGA CCCCGATCTC ATTCGGATAG AGCCTCGTCG CAACTGA
 
Protein sequence
MDRKGDRWTV DTQLRKIRAL AEAKDWNVVE VYEDNAVSAT KKRRAGTRWA EMLEDARAGR 
FSMVVAVDMD RLLRSTKDLN TLIDLGLRVV TVDGEIDLST ADGEFRATML AALARFEARR
KAERQIRSNE RRRAEGIPTS AWKAFGWTRD GELIPEEAEA IQRAFDAFLG EPSLSIRRIR
EDLNAAGHLT ARGSEFSVDA VRYLLANPLY AGYIKHYASG ELYPVQGEAF PPIVGEQTWR
AAVAKLEDNV RRSARQGNQP KYLLSTIGLC GKCGATLVSG TNSRKQPTYR CGEHFHLTRQ
REPLDAMVTE AVLTRLSSVD VHDLVMPQED AGPDREELLT ERNALVERVK ELSPLLRDIH
QPVLEITAAI NDVKARIDEI DAELLDRSVS VAAKLLEDID ESVGTAERRE VVESKWKELD
VDRRRMLVDE LVTVTIEPIV PGHVKFDPDL IRIEPRRN