| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ksed_19790 |
|---|
| Symbol | |
|---|
| ID | 8373483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Kytococcus sedentarius DSM 20547 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013169 |
|---|
| Strand | - |
|---|
| Start bp | 2062906 |
|---|
| End bp | 2065542 |
|---|
| Gene Length | 2637 bp |
|---|
| Protein Length | 878 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644992232 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_003149742 |
|---|
| Protein GI | 256825782 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.874876 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0111766 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGCA GCGAGCGCAG GACCGTCCGC GTGGGCGAGC GCACCCTCTC GGTCTCCAGC
CTGGACAAGG TGCTCTACCC CGAGGCGGGC ACCACCAAGG CCGACGTCGT GCACTACTAC
CTGTCGGTGG CCGAGGTCCT GCTGCCGCAG CTGGCGGGCC GTCCGGTGAC GCGCAAGCGC
TGGGTCGACG GGGTAGGCAC GGAGGGCGAC CCGGGGGAGG TGTTCTTCCG CAAGGACCTG
GAGGACTCGG CGCCGGACTG GATCCCCACC GGGCGGATCG TGCACGCCAA CCGGGCGAAC
TCCTACCCGC TGGCCACCGA GGCGGCGGTG TTGGCCTGGT TCGCCCAGGT GGCGGCACTG
GAGCTGCACA CCCCGCAGTG GCGCTTCGGG CCCGACGGGC AGCCCCGCCG CCCCGACCGG
CTGGTGCTGG ACCTCGACCC CGGCGAGGGG GTGGGGCTGA CCGAGTGCGC CCAGGTGGCG
CGGTGGTGCC GCGAGGTGCT CGACGGCATG GCGCTGGAGG CCTTCCCCGT GACCTCGGGG
TCGAAGGGCA TCCACCTGTA CGCCGCGCTC GACGGGACGC ACGATGCCGA GGCGGTCTCG
GCGGTCGCCC ACGAGCTCGC GCGGGCCTTG GAGGCCGACC ACCCGGACCT CGTCGTCTCC
ACCATGAAGC GTGCCCGCCG GGCCGGGAAG GTGTTCCTGG ACTGGAGCCA GAACAACGCC
TCCAAGACCA CCGTGGCTCC GTACTCGTTG CGCGGCCGCG CCCGGCCGAC GGTGGCCGCC
CCCCGTACGT GGGAGGAGCT CGACGACCCG GGCCTCGCGC AGCTCGAGCT CGATGAGGTG
CTCGACCGGG TCGCGGACGG CATCGACCCC GTCGCGAGCC TGGGGGCGGG CACGGGGCCC
GGGGGTGCTG GCGAGGTGTC GTCGCCGGCG CCCGACCGGC TGAGGACCTA CCGCTCGATG
CGGGACCCCG ACCGGACCGC CGAGCCGGTG CCGGCCGACC CGCCGCGGGA GCGCGAGGCG
CCGGACGGGG AGCTGCCGAG CTTCGTGATC CAGGAGCACC ACGCCAGCAG CCTGCACTGG
GACTTCCGGC TGGAGCACTC CGGCGTGCTG GTCTCCTGGG CCGTGCCCAA GGGGCCGCCG
CTGGAGCACG ACACCAACCG GCTGGCGGTC ATGACCGAGG ACCACCCGCT GGAGTACGGC
ACGTTCGAGG GCACCATCGC CGCGGGGGAG TACGGCGCCG GCGAGGTGAC CATCTGGGAC
GCGGGCACCT ACGAGCGCAA GAAGTGGCGG GAGGGCAAGG AGGTGATCGC CGTCCTGCAC
GGCCGCCCCG ATGGGGGGCT CGGCGGGGTG CCACGCCGGT TCGCCCTCAT CCAGGCCACC
GGCATGGGCA GCGAGCGCAA CTGGCTGCTG CGCCTCACCG ACGAGCAGCC CGGGGCGGGG
CATCCCCAAG ACGGTTCCCC CGAGGAGGTG ACGGCGGCAC CGTCACCGAG CCGGTCCCGT
GCTGACCGGT CGGACTCGCG CACCGCCAGA AGGGCCTTGC GCCGGCGGCC CGCGCCGGGG
TTCACCGTGG CCGACCTGCC GGCGGCGATG GCGGCCACGG CCGGGACCCC GGAGCAGGTG
GAGCGGGCGG TGGCCGGCGG CCAGGAGTGG GCGTTCGAGA TGAAGTGGGA CGGCTATCGC
GTGGTCGCGG GGGTCCGGAC GGCGGGGCAG GGTCCTGCCG ATGCCGATGC CGATGCCGAT
GCCGGTGCCG AGCGCGAGGG CGCCGTCGTG CTTGCCAGCC GCAACGGAAA GGACCTGACC
GACACCTTCC CCGCGGCCGT CGAACTCACC CGGCTGCTGC GGGGGGAGGC GGCCGAGCGG
GGCGGGGCCG TCCTCGATGG CGAGCTGGTG GCGTTGGACG ACCGGGGCCG CCCCGACTTC
GGTCTGCTGC AGGCGGCGCT CGGCGACGGG CCCGGCGTCA ACGCGGCCGG CGACCCCATC
GAGCTGCGCT ATCTCGTCTT CGACCTGCTG CAGCTCGGCG CGCCCGGGGA CCCGGAGGAC
CGGCAGCGCT CCCTGCTGCG CATCCCCTGG GGTGAACGAC GCGAGCTCCT GCGCGAGGTG
CTGGGTACTG GTGGCGATGC CGTGTCGGTG CCGCCGGCCC ACACCGGCAC CCTCGCCCAG
GCGCAGCGGG CGAGCCGGGG GCTGGGGCTG GAGGGGGTCG TCGCCAAGCG GGTCGATGCG
GTCTATCTGC CCGGCCAGCG CGGTTCGGCG TGGGTGAAGC TCAAGACGCA ACGCCACCAG
GAGGTGGTCG TCATCGGGGT CCGGCAGGGG CGCGGCGGCC GGTCCGGTGG CATCGGGTCG
CTGCTGGTGG CGGTGGGGGA CGACGAGGGC GAACTGCGCT ACGCCGGCCG GGTGGGGACG
GGCTTCAGCG CCGCCCAGCT GGCCGACATC GAGAAGACGC TGCGCCGCAT CGAGCGCAAG
ACGCCCCCGG TGGACGACGT GCCGGCGGCC GACCGCACGG ACGCCTGGTG GGTGACGCCG
CGGCTGGTGG GCGAGGTGTC CCTGGCCGGG CGCACGCGCG ACCAGCGGGT GCGGCAGGCG
GTCTGGCGGG GGTGGCGACC GGACAAGGAG GCCGGCGAGG TCCGATGGGA GGTGTAG
|
|---|
| Protein sequence | MARSERRTVR VGERTLSVSS LDKVLYPEAG TTKADVVHYY LSVAEVLLPQ LAGRPVTRKR
WVDGVGTEGD PGEVFFRKDL EDSAPDWIPT GRIVHANRAN SYPLATEAAV LAWFAQVAAL
ELHTPQWRFG PDGQPRRPDR LVLDLDPGEG VGLTECAQVA RWCREVLDGM ALEAFPVTSG
SKGIHLYAAL DGTHDAEAVS AVAHELARAL EADHPDLVVS TMKRARRAGK VFLDWSQNNA
SKTTVAPYSL RGRARPTVAA PRTWEELDDP GLAQLELDEV LDRVADGIDP VASLGAGTGP
GGAGEVSSPA PDRLRTYRSM RDPDRTAEPV PADPPREREA PDGELPSFVI QEHHASSLHW
DFRLEHSGVL VSWAVPKGPP LEHDTNRLAV MTEDHPLEYG TFEGTIAAGE YGAGEVTIWD
AGTYERKKWR EGKEVIAVLH GRPDGGLGGV PRRFALIQAT GMGSERNWLL RLTDEQPGAG
HPQDGSPEEV TAAPSPSRSR ADRSDSRTAR RALRRRPAPG FTVADLPAAM AATAGTPEQV
ERAVAGGQEW AFEMKWDGYR VVAGVRTAGQ GPADADADAD AGAEREGAVV LASRNGKDLT
DTFPAAVELT RLLRGEAAER GGAVLDGELV ALDDRGRPDF GLLQAALGDG PGVNAAGDPI
ELRYLVFDLL QLGAPGDPED RQRSLLRIPW GERRELLREV LGTGGDAVSV PPAHTGTLAQ
AQRASRGLGL EGVVAKRVDA VYLPGQRGSA WVKLKTQRHQ EVVVIGVRQG RGGRSGGIGS
LLVAVGDDEG ELRYAGRVGT GFSAAQLADI EKTLRRIERK TPPVDDVPAA DRTDAWWVTP
RLVGEVSLAG RTRDQRVRQA VWRGWRPDKE AGEVRWEV
|
|---|
| |