Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ksed_17640 |
Symbol | |
ID | 8373269 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Kytococcus sedentarius DSM 20547 |
Kingdom | Bacteria |
Replicon accession | NC_013169 |
Strand | + |
Start bp | 1837193 |
End bp | 1838545 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644992029 |
Product | arabinose efflux permease family protein |
Protein accession | YP_003149541 |
Protein GI | 256825581 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.00798573 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.929422 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGGCAAC GGGCAAGCAG TGCAGGGACA TGGGTCGTCG TCGCCGGCTA CTTCCTCGTG ATGCTGGACA CCACGATCGT GAATATCGCC CTGCCCCACC TCGGCACCGG TCTGTCAGTC TCACCGGGTG GCCTGGCGTG GATCATGGAC GCGTACACGC TCGTGTTCGC CGCCCTGCTG CTGCCCGCCG GCAGCGCCTG CGACCAGTAC GGGGCGCGCC GCGTCTACCT GACCGGCATC GCCGTGTTCG CGCTCGCCTC GATCGCGTGC GCCCTGGCCC CGAACGCTGG CCTGCTCATC GCGTCCCGCG CGATCCAAGG TATCGGGGCG GCCGCGGTCG TACCGGCCAC CCTCGCCCTG ATCACCGAGC TCTTCACCGA CCCCGCCGCA CGAGCCACAG CGGTCGGACT GTGGGGCGCG GCCGGCGGCG TGGCCGCGGC GGTCGGGCCG CTGCTCGGCG GCGTGCTCCT CGACGGAATC GGCTGGCGCG CCGCTTTCTG GGTCAACGTG CCCGTCGTCG TCGCCATAGC GATTGGCGCC CTCCGGTCTC TGCCCGCCCG TACCGCGAGA CCGGGCCGGC TCGACGCGGC CGGTCAGATG CTGGCGATCC TGGCGCTGGC CGGGTTGACG TTCGCGATCA TCGACACCGG CGACCACGGC CTCACCGCCC GTGCGGCCGC CGGGTTCGCT GTCGCGGTCC TGGCTGCAGT CGGGTTCGTG TGGCACGAGC GCCGCAGCCG GACGCCGATG CTGCCACTGT CGATCTTCTC CGCGCCCGGA TTCTCCACGG CGACGGTGGT CGGGTTCGTG CTGAACTTCA GCTTCTTCGG GCAACTGCTC GCACTCACCC TGTACATCCA GGACACCCGT GGCCTCGCAC CCGCGATCGC GGGGCTCGTC ATGGCCCCGC AAGCACTCGG CGCGATCATC GGCGCCCCGC TCGGCGGCCG CATCACCGCC GCACACACCC CACAGCGGGC GATGCTCACC GGCCTCGCGA TCGGCACGGC AGGATTCGCG AGTCTGATGA TCTTCGACAC CTCTACCCCT TACCCGGTGG TGGCGATCCT GACATTCGTC GCAGGGCTGG GAATGGCGAT CGCGATGCCC GCGGCGACCA GCGCCGCGGT CTCCGCCGCC CCGGACACCC TGACGGGGAT CGCCGGAAGC GTGATCAACG CCGCCAGACA GACCGGCAGC GTCGTCGGCG TCGCCGTGCT CGGCAGCCTC GCAACCGGGT TCGGCAACAT CACCGGCTTC CGAGCCGCAG CCCTCGGAGC GGCGATCGCC TTCGCTCTCG GCCTCGCTCT CGTCCTCTGG AACGCCGTGA ACAAGCAGTC GCTCTATTCC TGA
|
Protein sequence | MGQRASSAGT WVVVAGYFLV MLDTTIVNIA LPHLGTGLSV SPGGLAWIMD AYTLVFAALL LPAGSACDQY GARRVYLTGI AVFALASIAC ALAPNAGLLI ASRAIQGIGA AAVVPATLAL ITELFTDPAA RATAVGLWGA AGGVAAAVGP LLGGVLLDGI GWRAAFWVNV PVVVAIAIGA LRSLPARTAR PGRLDAAGQM LAILALAGLT FAIIDTGDHG LTARAAAGFA VAVLAAVGFV WHERRSRTPM LPLSIFSAPG FSTATVVGFV LNFSFFGQLL ALTLYIQDTR GLAPAIAGLV MAPQALGAII GAPLGGRITA AHTPQRAMLT GLAIGTAGFA SLMIFDTSTP YPVVAILTFV AGLGMAIAMP AATSAAVSAA PDTLTGIAGS VINAARQTGS VVGVAVLGSL ATGFGNITGF RAAALGAAIA FALGLALVLW NAVNKQSLYS
|
| |