Gene Ksed_16040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagKsed_16040 
Symbol 
ID8373110 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameKytococcus sedentarius DSM 20547 
KingdomBacteria 
Replicon accessionNC_013169 
Strand
Start bp1649504 
End bp1653286 
Gene Length3783 bp 
Protein Length1260 aa 
Translation table11 
GC content74% 
IMG OID644991872 
ProductDNA polymerase III, alpha subunit 
Protein accessionYP_003149384 
Protein GI256825424 
COG category[L] Replication, recombination and repair 
COG ID[COG0587] DNA polymerase III, alpha subunit 
TIGRFAM ID[TIGR00594] DNA-directed DNA polymerase III (polc) 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.390717 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0575947 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCCCGCG CAGGGGCGGT GATGAGCGCT GACTTCGCCC ACCTGCACGT GGCCTCCAGC 
TTCTCGTTGC AGTACGGGAC CTCCCGGCCG CAGGAGCTCG TGGACCGTGC AGCGGCGTGG
GGGCAGTCCC ACCTCGCCCT GACCGACCGC GATGGTCTCT ACGGGGCGGT GCGCTTCACC
CGGGCCTGTG TGGAGGCCGG GATCGTGCCG GTGGTGGGGG TCGACCTCGC CGTGGCCCAC
GACGCGCCGG CCGGCCCGCC GGCCGCGCGG AGAGCCGGCC GGCGGCAGCA GCCCGTCCGG
GGCGGCTCCT GGGTGGACGA GAGCCACTGT CGGGTGCGGG TGCTGGCCGC CGGGCGTGCA
GCGGGGCACG GGAACGGTGT GGGGTGGGCG GCGCTGTGCC GGCTGGTCTC CCACACCCAC
GCGGCGGGGG AGCGGGGTGA GCCCCGCACC ACCCGGGCGC TGGTGGCCGG TGCTGCTCCC
GCGGTCCGGG TGCTGCTGGG GCCGGACTCC GACGTGGGGC AGGCGGTCCT GCAGCGTCGC
CGGTCCGAGG CCAGGCGGTT GCTGCACGGG TGGGTGGAGG CGGTGGCCGA GCAGGTGGGC
GGGACCGCTG CCGCCCGTCG GGTGGTGGTG GTCGAGCTGG TGTGCAGCGG GGCGCCGGCT
GGTTCCCCGG GGTGCACAGA GCAGGCCGTG CGCATGTGGC AGCTGGCGCA GGAGGTCGGG
GTGCGCGCGG TGCTGACCGC CGCGGTCCGG CACGCCGACC CCGAGGGCGT GGTGGTGGCC
GACGTGCTGG ACGCCGCCCG TCAGCACGTG CTGCTCGACC CCCGCCACCT CGACCAGCGC
ACCTCCGCGG CCCACCTGGC CTCGACGGCC AGCATGGTCC GCGTGGCCCA CTGGCTGGCC
GAGCGGGCCG GCCAGCCACC GCGGGTCGCC GACCAGCTGC TGGCCGCGAC CTCGGGGGTG
GCAGCCGAGT GCGGGCTCTC CGCCCGGGAC GACCTCGGGA TCGGGTCGGT GCACCTGCCC
GAGCCCGAGG TGCTCGGGTT CACCGACACC GCCGACGCCC TACGTGGCCT GACCGCGCGG
TGCCGCGGGG CGGTCGACGA GATGTACCGG GGCGCAGCAC TGCGGCGCCG TGCCCGGGAG
CGGATGGAGG CCGAGCTGGC CACCATCGAG CAGTTGGGCT ACCCGACCTA CTTCCTGACC
GTGGCCCGGG TGTGCGACCT GATCCGCGAG GTGGGGGGTC GCGTGGCGGC CCGGGGCTCC
GGCGCCGGGT CCCTGGTGAA CCACCTGCTG GGGATCAGTC GGGTGGACCC GTTGCGGCAC
GACCTGCTGA TGGAGCGCTT CTGCTCGCCG CTGCGGGCCG AGCTGCCGGA CATCGACATC
GACGTGGAGT CGGCGCGCCG CCCCGAGATC TACGAACGCA TCCTGGAGCG GTTCGGAGCG
GGACGGGTGA CCTGCGTGTC CATGATGGAG ACCTACCGGG TGCGGCACGC CGTCCGGGAC
GTGGGGGCGG TGCTGGGCAT GCCACCGGTG GAGGTGGACG CCATCGCCAA GGCCTTCCCC
CACGTGCGCG CCCGGGACGC CCGCGCCGCC ATCCGGGACC TGCCCGAGCT GCGGGCCGCC
GGGTTGGACG CCCCCCGCCT GCAGCGGATG TTCGACCTCG TGGAGCGCCT GGACGGCCTG
CCGCGCCACA TCGCCCTGCA CCCGTGCGGG GTGGTGCTGT CGAACCTGGG CCTGCGCGAC
CGCACGCCGG TGGAGGAGAG CTGGATCGGT TTCCCGATGA GCCAGTTCGA CAAGGACGAC
GTGGAGGACA TGGGGCTGCT CAAGCTGGAC GTCCTGGGCA TCCGCATGCA GTCGGCGATG
GCGCACACCG TGGACCTGGT GGAGTCCACC CACGGGGTCC GCCTCGACCT GGACGACGAG
GAGCAGGTGC CGCACGACGA CGCCGAGACC TTCGGGCTGA TCGGGTCGAC CCGCACCCTG
GGCTGCTTCC AGATCGAGTC CCCCGGGCAG CGGGAGCTGG TTGGCAAGTT CGGCCCACAG
ACCTTCGAGG ACATCATCAT CGACATCTCG CTGTTCCGTC CCGGGCCGGT GAAGTCGGAC
ATGATCACCC CCTTCCTGTC GGCGCGGCAG GGGTGGGCGG AGCCACTGCT CATGCACCCG
GCGCTCGAGG AGCACCTGCG CAGCACCGAG GGGGTGGTGG TCTTCCACGA GCAGGTGCTG
CAGATCATCA CCGCCACCAC CGGGGTGAGC CTGGCCCACT CGGACGAGGC GCGCCGGGCC
ATGGGATCGC CCGACGGGCG GGACGCCGTG GAACGGTGGT GGCGCCCGGC GGCCGCCGCC
CGCGGTTTCA CCGGGGAGGT GGCCGACCGC ATCTGGGAGG TGCTGGCAGC CTTCGCCTCC
TTCGGGTTCT GCAAGGCCCA CGCGGCCGCC TTCGCCCTGC CCACCTACCA GTCGGCCTGG
TTGAAGACCC ACTACCCGGC GCACTTCATG GCGGGGGTGC TGACCCACGA CCCCGGCATG
TACCCCAAGC GGTTGATCAT GGACGACGCC CGGGAGCTGG GCGTCGAGAT CCTGGGCCTG
GACGTGAACG CCTCCGGTGA GGGCTACCGG GTGGAGCGGG TCGCCGACTC GTCCGGCCCG
GGAGAGTGGC CGGCCTCGGC GGGCCCGGGC GCGCCCGACC CCGACCTGGC CCTCGACCGG
GTGCGGCAGC GGGCACGGCA GTGGGGCGTG CGGATCGCGC TGACCGAGGT GAAGGGACTG
GGCGAGGACG ATGCCCGACG CATCGTGGAG GGGCAGCCGT ACAGCTCGTT GGCCGACTTT
TGGCAGCGGG CGCAGGTGGA CCGCCCCCTG GTGGAGCGCA TGGTCCTGGC TGGTGCCTTC
GACGCCTTCG CGTCCCCGGC GCGCCGCCGC GACCTGCTGG TGGAGCTGAT GGACCTCGAG
CGGTGGCGCG ACCCCCGGCC CCGCGGCAAG CGCGCCCGCC TGGCCGGGGA ACGGGCCGAA
CAGGACCGCC GGCGCCGCGC CGGTCACGGT ACCCAGCAGG TCCTGGAGCT CGGCGTTCCC
CGGGCCGTCG ACGCCACCGG GCTGCCACCG ATGGCGCTGG AGGAGCAGGT GGCCCACGAG
CTGGACGTCC TGGGCATGGA CGTCACGGCC CACGTGCTCG AACCGCACCT GCCCACCCTG
CGGGAGCTGG GCGTCACGCC GGCCCGGGAC GTCCGGACCA TGCGGTCCGG GGCGGAGGTC
CTGGTGGCCG GGGTGCGGGT GGCCACCCAG ACTCCTCCGG TCCGGTCGGG ACGGCGGGTG
GTCTTCGTGA CCCTCAACGA CCCCACCGGT GCCAGCGACG CGACCTTCTT CGAGGACGTC
CAGGGCCCCT ACGCCACGGT GCTCTTCCAG TCCTGGTTCC TGCTGGTGCG TGGCGTCGTG
CGCCGGACCG GCCCCCGGGG GGTGTCGCTG CGGGCCACCG GGGCCTGGGA GCTCTCGGGG
CTCACCGAGG CTCACCGGGC GGGGGGAGCC AGTGGGCTGT TCACCGCGTG GGAGGAGGCC
GACCGGGTGC AGCACGAGCG CAGCGAGGCG GGACAGGCTG CGGCACGTGC GGTACGGGCA
GAGGGACAGG AGGCTCCGGA GGGCCGGAGG GTGCTGGTGC ACGCCTCGGG GTACCGCCAG
TCGCCCTACG CGGACGTCGG CGCAGCCGGA CCGGCCGTGG CGAGTGGCCG CGTGCTGGGT
GCGGGCGGCG GAGTGCCCTC GCGCAAGCTC TGGCACAGCT CGCCGGGGAG CTCGGGGTGG
TGA
 
Protein sequence
MARAGAVMSA DFAHLHVASS FSLQYGTSRP QELVDRAAAW GQSHLALTDR DGLYGAVRFT 
RACVEAGIVP VVGVDLAVAH DAPAGPPAAR RAGRRQQPVR GGSWVDESHC RVRVLAAGRA
AGHGNGVGWA ALCRLVSHTH AAGERGEPRT TRALVAGAAP AVRVLLGPDS DVGQAVLQRR
RSEARRLLHG WVEAVAEQVG GTAAARRVVV VELVCSGAPA GSPGCTEQAV RMWQLAQEVG
VRAVLTAAVR HADPEGVVVA DVLDAARQHV LLDPRHLDQR TSAAHLASTA SMVRVAHWLA
ERAGQPPRVA DQLLAATSGV AAECGLSARD DLGIGSVHLP EPEVLGFTDT ADALRGLTAR
CRGAVDEMYR GAALRRRARE RMEAELATIE QLGYPTYFLT VARVCDLIRE VGGRVAARGS
GAGSLVNHLL GISRVDPLRH DLLMERFCSP LRAELPDIDI DVESARRPEI YERILERFGA
GRVTCVSMME TYRVRHAVRD VGAVLGMPPV EVDAIAKAFP HVRARDARAA IRDLPELRAA
GLDAPRLQRM FDLVERLDGL PRHIALHPCG VVLSNLGLRD RTPVEESWIG FPMSQFDKDD
VEDMGLLKLD VLGIRMQSAM AHTVDLVEST HGVRLDLDDE EQVPHDDAET FGLIGSTRTL
GCFQIESPGQ RELVGKFGPQ TFEDIIIDIS LFRPGPVKSD MITPFLSARQ GWAEPLLMHP
ALEEHLRSTE GVVVFHEQVL QIITATTGVS LAHSDEARRA MGSPDGRDAV ERWWRPAAAA
RGFTGEVADR IWEVLAAFAS FGFCKAHAAA FALPTYQSAW LKTHYPAHFM AGVLTHDPGM
YPKRLIMDDA RELGVEILGL DVNASGEGYR VERVADSSGP GEWPASAGPG APDPDLALDR
VRQRARQWGV RIALTEVKGL GEDDARRIVE GQPYSSLADF WQRAQVDRPL VERMVLAGAF
DAFASPARRR DLLVELMDLE RWRDPRPRGK RARLAGERAE QDRRRRAGHG TQQVLELGVP
RAVDATGLPP MALEEQVAHE LDVLGMDVTA HVLEPHLPTL RELGVTPARD VRTMRSGAEV
LVAGVRVATQ TPPVRSGRRV VFVTLNDPTG ASDATFFEDV QGPYATVLFQ SWFLLVRGVV
RRTGPRGVSL RATGAWELSG LTEAHRAGGA SGLFTAWEEA DRVQHERSEA GQAAARAVRA
EGQEAPEGRR VLVHASGYRQ SPYADVGAAG PAVASGRVLG AGGGVPSRKL WHSSPGSSGW