| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ksed_12540 |
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| Symbol | |
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| ID | 8372762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Kytococcus sedentarius DSM 20547 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013169 |
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| Strand | + |
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| Start bp | 1291110 |
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| End bp | 1292114 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 77% |
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| IMG OID | 644991531 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_003149051 |
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| Protein GI | 256825091 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.00205236 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.478593 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCGAGC CCCCGGGCAC GGGTGGTGCA GCGGGCCGGG CGCCGCACGC GGTCGTCGTG
GGTTCCCCGG TGGCGCACTC GCTCTCGCCG CTGCTGCACC GTGCGGCCTG GCAGGAGCTG
GGTCTGGGGG CGGGGAGCTA CGAGCGCGTC GAGGTGCCCG CGGGAGAGCT GGCGCAGAGC
GTCGAGCGCC TGCACTCGCG CGAGCAGGTG ACAGCGCTGT CGGTCACGAT GCCGCTCAAG
GAGGAGGCCC TCGCCCTGGG GCTCGCGGGC GCGGGTGCGT CGGAGGTGGC CGTCCTGGCC
GGCGGGGCGA ACACGCTCGT GCTGGGCGGT GACGGGTGGG CCGCGAGCAA CACCGACGTG
CCGGCGCTGG CGCGCGTGAT CGGCCGGGCC TGCGGGCAGC GGTCCACTCC GGGGGCCGAC
CCGGCCGCAC CGCACGAGTC CGAAGTGGTG CCGGGGGAGG TAGTGCTGCT CGGGTCGGGT
GCCACGGCCC GTTCGGGGCT GTTGGCGCTG CACTGGTGCG GCGCGCGGGA GGTCACGGTG
GCGGTGCGCG ACGCGGTCCG CCGGGACTTC TCGCGGCTGG CCGACGAGCT CGGCATCCGG
GTGGCGGTGG TGCGCCTGGA CGCCCTGGCG CCGACGCTGC GCGAGGCGAC GGCTGCACCG
GGCAGCCTGC TCGTGGTGAA CACCCTGCCC GCCGGCTGGT GGGAGACCCT GGCGGCGCCC
GCCTGGGCAC CCGGTGGGCG GGCGCACGGG GGGCTGCACC AGCGGGACGC CCCCGGGCCG
GATCACCCGG CGGCGGGGGT CGTGTGGGTG GACGCCCAGT ACGCAGGCTG GCCGCACCCG
TGGGCGGCGG CCGCCGAGGA CGCCGGGGCT CAGGTGCTCA GCGGATTGCA CATGCTCGTG
GAGCAGGCCG TGGACCAGGT GGAGCTCATG ACCGGCCTGC GCCCCACGGC CGAGGCCACC
GCCTCCCTGC TGCCGCCGGA GCTCCGCGCG CTGCATAGGG TGTGA
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| Protein sequence | MSEPPGTGGA AGRAPHAVVV GSPVAHSLSP LLHRAAWQEL GLGAGSYERV EVPAGELAQS
VERLHSREQV TALSVTMPLK EEALALGLAG AGASEVAVLA GGANTLVLGG DGWAASNTDV
PALARVIGRA CGQRSTPGAD PAAPHESEVV PGEVVLLGSG ATARSGLLAL HWCGAREVTV
AVRDAVRRDF SRLADELGIR VAVVRLDALA PTLREATAAP GSLLVVNTLP AGWWETLAAP
AWAPGGRAHG GLHQRDAPGP DHPAAGVVWV DAQYAGWPHP WAAAAEDAGA QVLSGLHMLV
EQAVDQVELM TGLRPTAEAT ASLLPPELRA LHRV
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